Basic Information
Locus ID:
gene.Posoc01g08320
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 50018794 | 50020062 | - | gene.Posoc01g08320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.47 | 46,556.64 Da | 45.11 | 103.01 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 13 | 55 | 3.91571E-23 | - |
| Pfam | PF04564 | U-box domain | 9 | 82 | 4.8E-19 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 7 | 87 | 8.58E-28 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 164 | 381 | 4.48E-16 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 8 | 84 | 3.9E-27 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 87 | 413 | 2.3E-15 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 12 | 77 | 1.8E-29 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 8 | 84 | 36.799877 | IPR003613 |
| Coils | Coil | Coil | 124 | 144 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_010925800.1 | U-box domain-containing protein 21-like [Elaeis guineensis] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A843XT60 | RING-type E3 ubiquitin transferase OS=Colocasia esculenta OX=4460 GN=Taro_055508 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology