Basic Information
Locus ID:
gene.Posoc01g06700
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 35041650 | 35171843 | + | gene.Posoc01g06700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 476,722.06 Da | 46.07 | 90.06 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 2646 | 2758 | 0.00622456 | - |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2012 | 2168 | 9.4E-12 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2254 | 2392 | 1.0E-9 | IPR009291 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 580 | 804 | 4.9E-30 | IPR031642 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3273 | 3581 | 4.4E-18 | IPR009543 |
| Pfam | PF00168 | C2 domain | 2643 | 2752 | 0.0013 | IPR000008 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 140 | 383 | 3.8E-63 | IPR031646 |
| Pfam | PF16909 | Vacuolar-sorting-associated 13 protein C-terminal | 3827 | 3931 | 3.5E-8 | IPR031645 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 115 | 1.1E-30 | IPR026854 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.4 | - | 0 |
| RefSeq | XP_038986982.1 | uncharacterized protein LOC103722332 isoform X1 [Phoenix dactylifera] | 0 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9NNI7 | C2 domain-containing protein OS=Zostera marina OX=29655 GN=ZOSMA_79G00090 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology