halophFGD

Basic Information

Locus ID: gene.Posoc01g06680

Species & Taxonomic ID: Posidonia oceanica & 55489

Genome Assembly: GCA_037176725.1

Description: Belongs to the universal ribosomal protein uS3 family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr01	35000845	35005365	-	gene.Posoc01g06680

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.45	26,726.10 Da	51.12	80.83	-0.28

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00189	Ribosomal protein S3, C-terminal domain	151	214	1.2E-14	IPR001351
SUPERFAMILY	SSF54821	Ribosomal protein S3 C-terminal domain	151	214	2.35E-13	IPR036419
Gene3D	G3DSA:3.30.1140.32	-	146	227	1.2E-30	IPR036419

Gene Ontology

Biological Process:

GO:0006412 (translation)

Molecular Function:

GO:0003735 (structural constituent of ribosome)

KEGG Pathway

KO Term:

K02985 (small subunit ribosomal protein S3e)

Pathway:

ko03010 (Ribosome) map03010 (Ribosome)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G53870.1	Ribosomal protein S3 family protein.
RefSeq	XP_021901978.1	40S ribosomal protein S3-3-like [Carica papaya]
Swiss-Prot	Q9M339	Small ribosomal subunit protein uS3y OS=Arabidopsis thaliana OX=3702 GN=RPS3B PE=1 SV=1
TrEMBL	A0A2H9ZUR5	40S ribosomal protein S3-3 OS=Apostasia shenzhenica OX=1088818 GN=RPS3C PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Posidoniaceae	Posidonia oceanica	37	gene.Posoc01g06680, gene.Posoc01g06880, gene.Posoc01g26440 ... gene.Posoc01g29480, gene.Posoc01g33290, gene.Posoc02g00010, gene.Posoc02g01630, gene.Posoc02g10450, gene.Posoc02g14150, gene.Posoc02g16790, gene.Posoc02g17140, gene.Posoc02g17150, gene.Posoc03g20350, gene.Posoc03g22380, gene.Posoc03g25910, gene.Posoc04g02750, gene.Posoc04g03060, gene.Posoc04g12880, gene.Posoc04g19770, gene.Posoc05g21170, gene.Posoc06g09400, gene.Posoc06g16150, gene.Posoc06g22130, gene.Posoc07g00920, gene.Posoc07g06820, gene.Posoc07g09250, gene.Posoc08g04280, gene.Posoc08g05080, gene.Posoc08g07430, gene.Posoc08g08080, gene.Posoc08g09780, gene.Posoc08g12200, gene.Posoc09g03610, gene.Posoc09g08200, gene.Posoc10g06970, gene.Posoc10g06980, gene.Posoc10g06990