Basic Information
Locus ID:
gene.Posoc01g04150
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Short Name:
AFB3
Description:
Protein AUXIN SIGNALING F-BOX
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 21560451 | 21562961 | - | gene.Posoc01g04150 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.46 | 63,245.00 Da | 44.91 | 100.77 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 4 | 44 | 2.8E-15 | IPR041567 |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 37 | 3.01E-6 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 131 | 535 | 2.55E-22 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 43 | 559 | 7.3E-129 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 42 | 5.5E-14 | - |
| SMART | SM00367 | LRR_CC_2 | 207 | 227 | 460.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 474 | 499 | 520.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 365 | 389 | 580.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 425 | 448 | 0.0024 | IPR006553 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12820.1 | auxin signaling F-box 3. Auxin receptor involved in primary and lateral root growth inhibition in response to nitrate. Target of miR393. Induced by nitrate in primary roots. | 0 |
| RefSeq | XP_010929637.1 | transport inhibitor response 1-like protein Os04g0395600 [Elaeis guineensis] | 0 |
| Q7XVM8 | Transport inhibitor response 1-like protein Os04g0395600 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0395600 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9RX07 | transport inhibitor response 1-like protein Os04g0395600 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105051060 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg14306, jg2613, jg34153, jg9998 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16984 |
| Amaranthaceae | Atriplex hortensis | 5 | Ah005981, Ah014677, Ah024835, Ah024836, Ah035260 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g024250 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21373, Sbi_jg22478 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16356 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007707, GOSA_00016414 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl42329, Sgl42367, Sgl47107, Sgl62916, Sgl67524 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000012395, gene:ENSEOMG00000018665 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1BG0019410, CQ.Regalona.r1.2AG0021110 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30176510 |
| Apiaceae | Apium graveolens | 4 | Ag10G01260, Ag5G01402, Ag8G00467, AgUnG00255 |
| Arecaceae | Cocos nucifera | 3 | COCNU_12G008680, COCNU_16G008650, scaffold010560G000010 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103695487, gene-LOC103723578, gene-LOC103723671 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.22.V1.1, AsparagusV1_08.3568.V1.1 |
| Asteraceae | Flaveria trinervia | 6 | Ftri17G02002, Ftri17G20419, Ftri17G29930, Ftri6G04037 ... |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G39940.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016416m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g22250.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g005360.2N, BniB06g004890.2N, BniB08g025670.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G0177, Ceq08G0061 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0197 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno15g07800, gene.Cymno18g00130 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate02g02570, gene.Thate02g17440, gene.Thate08g13340 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10932, nbisL1-mrna-3965 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1832 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00011824, Pov_00040453 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G06540, Lb7G33801, Lb7G33804 |
| Poaceae | Echinochloa crus-galli | 9 | AH01.4243, AH02.3911, AH05.2230, BH01.4549, BH02.3933 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_1AG0040250, gene-QOZ80_1BG0090300 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0074250.1, HORVU.MOREX.r3.3HG0301480.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_014411, gene-QYE76_056438, gene-QYE76_069104 |
| Poaceae | Oryza coarctata | 7 | Oco01G025160, Oco02G026070, Oco05G009030, Oco06G009390 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os01g63420.1, LOC_Os03g15880.4, LOC_Os05g37690.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_01G406900, gene-BS78_03G339600 ... |
| Poaceae | Puccinellia tenuiflora | 7 | Pt_Chr0102204, Pt_Chr0102225, Pt_Chr0202640, Pt_Chr0300043 ... |
| Poaceae | Sporobolus alterniflorus | 11 | Chr01G019550, Chr01G030580, Chr02G004400, Chr04G007330 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G454000, Tel3E01G585500, Tel4E01G374600 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC1AG041510, gene_TRIDC1BG047280 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS1A02G279100.1, TraesCS1B02G288100.1 ... |
| Poaceae | Zea mays | 6 | Zm00001eb011780_P003, Zm00001eb147720_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-11370, nbis-gene-2147, nbis-gene-24070 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g11560, Zma_g1570, Zma_g3964, Zma_g9018 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG05.192, evm.TU.LG05.977, evm.TU.LG10.1036 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g04150, gene.Posoc07g15830 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.340, evm.TU.Scaffold_4_RagTag.993 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14071, nbisL1-mrna-25936 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-15138, nbisL1-mrna-1788 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-1417, nbisL1-mrna-14227 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000005l.148, evm.TU.utg000008l.640 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000276, Maker00010218 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2002, nbisL1-mrna-455 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-18875, nbisL1-mrna-9324, nbisL1-mrna-9657 |
| Salicaceae | Populus euphratica | 2 | populus_peu06512, populus_peu20389 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132640389 |
| Solanaceae | Solanum chilense | 1 | SOLCI003808900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107020531 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.13159_chr07_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G1010 |
| Zosteraceae | Zostera marina | 4 | Zosma01g21340.v3.1, Zosma01g23720.v3.1, Zosma06g27780.v3.1 ... |