Basic Information
Locus ID:
gene.Cymno18g05760
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr18 | 11456200 | 11456892 | + | gene.Cymno18g05760 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.04 | 25,415.45 Da | 65.77 | 67.52 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 143 | 186 | 1.37052E-16 | - |
| Pfam | PF13639 | Ring finger domain | 143 | 186 | 2.6E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 138 | 192 | 4.04E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 119 | 191 | 9.8E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 144 | 185 | 6.9E-8 | IPR001841 |
| SMART | SM01197 | FANCL_C_2 | 140 | 193 | 0.0038 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 144 | 186 | 12.84335 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 230 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 230 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G17600.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_008786322.2 | E3 ubiquitin-protein ligase Os04g0590900-like [Phoenix dactylifera] | 0 |
| Q7XLY8 | E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8B7BVL5 | RING-type E3 ubiquitin transferase OS=Phoenix dactylifera OX=42345 GN=LOC103704697 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology