Basic Information
Locus ID:
gene.Cymno18g05700
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr18 | 11427373 | 11429583 | - | gene.Cymno18g05700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 78,151.59 Da | 51.66 | 63.27 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11449 | bHLH_AtAIB_like | 546 | 621 | 4.17177E-46 | - |
| Pfam | PF14215 | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 79 | 267 | 2.9E-46 | IPR025610 |
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 553 | 598 | 4.6E-11 | IPR011598 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 552 | 617 | 1.14E-19 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 541 | 625 | 6.6E-18 | IPR036638 |
| SMART | SM00353 | finulus | 555 | 604 | 1.6E-17 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 549 | 598 | 17.745609 | IPR011598 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 429 | 444 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 402 | 455 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 543 | 559 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 480 | 559 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 515 | 536 | - | - |
| Coils | Coil | Coil | 595 | 625 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32640.1 | Basic helix-loop-helix (bHLH) DNA-binding family protein. Encodes a MYC-related transcriptional activator with a typical DNA binding domain of a basic helix-loop-helix leucine zipper motif. Binds to an extended G-Box promoter motif. Its transcription is induced by dehydration stress and ABA treatment. Negative regulator of blue lightmediated photomorphogenic growth and blue and far-red-lightregulated gene expression. Positive regulator of lateral root formation. Regulates diverse JA-dependent functions. Negatively regulates Trp metabolism and biosynthesis of Trp-derived secondary metabolites. Positively regulates flavonoid biosynthesis, resistance to insects, and response to oxidative stress. Regulates other transcription factors, and negatively regulates its own expression. | 0 |
| RefSeq | XP_010933462.1 | transcription factor MYC2 [Elaeis guineensis] | 0 |
| A0A3Q7HRZ6 | Transcription factor MYC2 OS=Solanum lycopersicum OX=4081 GN=MYC2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PBL1 | Transcription factor MYC2 OS=Zostera marina OX=29655 GN=ZOSMA_29G01200 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology