Basic Information
Locus ID:
gene.Cymno18g05210
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Anaphase-promoting complex subunit cdc20
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr18 | 11175241 | 11176939 | - | gene.Cymno18g05210 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.87 | 52,348.17 Da | 52.68 | 75.62 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 276 | 311 | 9.5E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 415 | 450 | 0.001 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 196 | 252 | 5.9E-6 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 327 | 365 | 0.0042 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 159 | 451 | 1.1E-57 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 101 | 453 | 4.0E-122 | IPR015943 |
| SMART | SM00320 | WD40_4 | 142 | 183 | 200.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 368 | 408 | 410.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 230 | 268 | 1.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 272 | 311 | 6.8E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 323 | 365 | 0.0017 | IPR001680 |
| SMART | SM00320 | WD40_4 | 411 | 450 | 2.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 188 | 227 | 0.0027 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 195 | 236 | 11.009724 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 418 | 451 | 10.548323 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 418 | 451 | 12.680634 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 279 | 313 | 11.365591 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 279 | 320 | 14.05078 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 298 | 312 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 437 | 451 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_010918104.1 | cell division cycle 20.2, cofactor of APC complex [Elaeis guineensis] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9R5I3 | cell division cycle 20.2, cofactor of APC complex OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105042540 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology