Basic Information
Locus ID:
gene.Cymno18g04950
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr18 | 10990394 | 11004885 | + | gene.Cymno18g04950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.92 | 81,803.81 Da | 42.28 | 90.32 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 295 | 431 | 5.48834E-70 | - |
| CDD | cd18015 | DEXHc_RecQ1 | 86 | 294 | 1.79124E-131 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 106 | 274 | 2.5E-18 | IPR011545 |
| Pfam | PF00570 | HRDC domain | 619 | 679 | 1.1E-7 | IPR002121 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 324 | 421 | 1.7E-15 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 434 | 490 | 5.3E-13 | IPR032284 |
| SUPERFAMILY | SSF47819 | HRDC-like | 616 | 684 | 1.88E-6 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 143 | 438 | 1.91E-55 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 614 | 684 | 8.7E-12 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 59 | 294 | 3.7E-89 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 295 | 492 | 7.1E-65 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 495 | 596 | 8.2E-25 | IPR036388 |
| SMART | SM00490 | helicmild6 | 341 | 422 | 1.9E-24 | IPR001650 |
| SMART | SM00487 | ultradead3 | 100 | 303 | 1.2E-26 | IPR014001 |
| SMART | SM00956 | RQC_2 | 499 | 596 | 0.0062 | IPR018982 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 97 | 522 | 7.0E-161 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 112 | 287 | 23.643461 | IPR014001 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 610 | 689 | 13.258347 | IPR002121 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 312 | 461 | 19.919994 | IPR001650 |
| Coils | Coil | Coil | 11 | 52 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.3 | - | 0 |
| RefSeq | XP_010276962.1 | PREDICTED: mediator of RNA polymerase II transcription subunit 34 isoform X1 [Nelumbo nucifera] | 0 |
| Q9FT73 | ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U8BJL2 | ATP-dependent DNA helicase OS=Nelumbo nucifera OX=4432 GN=LOC104611560 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology