Basic Information
Locus ID:
gene.Cymno18g04100
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
TAF RNA Polymerase I subunit A
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr18 | 10235725 | 10282772 | - | gene.Cymno18g04100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.48 | 82,625.83 Da | 52.51 | 82.76 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02892 | BED zinc finger | 648 | 685 | 8.4E-7 | IPR003656 |
| Pfam | PF14929 | TAF RNA Polymerase I subunit A | 101 | 602 | 1.6E-84 | IPR039495 |
| ProSiteProfiles | PS50808 | Zinc finger BED-type profile. | 645 | 702 | 10.067039 | IPR003656 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 58 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53200.1 | 0 | |
| RefSeq | XP_010913443.1 | uncharacterized protein LOC105039128 [Elaeis guineensis] | 0 |
| TrEMBL | A0A0K9NX72 | BED-type domain-containing protein OS=Zostera marina OX=29655 GN=ZOSMA_530G00030 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg38257 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12502 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah007895 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g086240 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg19224, Sbi_jg19225, Sbi_jg37635 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5479 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00006775, GOSA_00006776, GOSA_00006778 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl23273, Sgl28343 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011991, gene:ENSEOMG00000029763 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0014170, CQ.Regalona.r1.4BG0019220 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30162870 |
| Apiaceae | Apium graveolens | 2 | Ag11G03167, Ag9G02450 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G009790 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.3060.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri4G30344 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G53200.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10011326m.g.v1.0, Thhalv10028227m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g39780.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g056130.2N, BniB06g027560.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G0995 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G1112, Cgl01G1167 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno18g04100 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g37050 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1413 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00022211, Pov_00038895 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G34094 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.2238, BH06.1018, CH06.1110 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0515450, gene-QOZ80_6BG0467170 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0668390.1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_029033, gene-QYE76_029078, gene-QYE76_052151 ... |
| Poaceae | Oryza coarctata | 1 | Oco12G006500 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g13570.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G103400 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0203467, Pt_Chr0404606, Pt_Chr0604854 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr11G018750, Chr11G018980, Chr11G018990, Chr14G004800 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel7E01G360300, Tel7E01G361200, Tel7E01G361300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1BG011400, gene_TRIDC7AG024670 |
| Poaceae | Triticum aestivum | 4 | TraesCS1B02G084900.1, TraesCS7A02G197000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb280030_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-50282, nbis-gene-51340 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29430 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG25.1146 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g04210 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.155 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21802 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10111 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7546 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.106 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017666 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6732 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21683 |
| Salicaceae | Populus euphratica | 1 | populus_peu30349 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132636448 |
| Solanaceae | Solanum chilense | 1 | SOLCI003394400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005560 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.22165_chr09_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G1988 |
| Zosteraceae | Zostera marina | 1 | Zosma04g05660.v3.1 |