Basic Information
Locus ID:
gene.Cymno18g03810
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr18 | 9928191 | 9933587 | + | gene.Cymno18g03810 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.74 | 147,393.92 Da | 39.70 | 91.23 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 104 | 412 | 6.69225E-75 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 336 | 371 | 3.8E-5 | IPR001680 |
| Pfam | PF06957 | Coatomer (COPI) alpha subunit C-terminus | 910 | 1314 | 2.3E-161 | IPR010714 |
| Pfam | PF00400 | WD domain, G-beta repeat | 221 | 258 | 1.8E-7 | IPR001680 |
| Pfam | PF04053 | Coatomer WD associated region | 437 | 863 | 6.1E-132 | IPR006692 |
| Pfam | PF00400 | WD domain, G-beta repeat | 293 | 326 | 2.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 179 | 216 | 6.8E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 140 | 174 | 9.0E-5 | IPR001680 |
| SUPERFAMILY | SSF51004 | C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase | 332 | 643 | 6.54E-16 | IPR011048 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 97 | 410 | 3.48E-73 | IPR036322 |
| Gene3D | G3DSA:1.25.40.470 | - | 735 | 907 | 2.6E-63 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 95 | 414 | 1.7E-125 | IPR015943 |
| SMART | SM00320 | WD40_4 | 93 | 132 | 0.58 | IPR001680 |
| SMART | SM00320 | WD40_4 | 374 | 412 | 270.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 177 | 216 | 2.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 288 | 327 | 2.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 135 | 174 | 8.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 219 | 258 | 7.8E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 332 | 371 | 1.9E-6 | IPR001680 |
| PIRSF | PIRSF003354 | Alpha-COP | 94 | 1310 | 0.0 | IPR016391 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 339 | 372 | 12.156496 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 184 | 216 | 10.838322 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 226 | 259 | 12.631039 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 184 | 225 | 13.649761 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 142 | 174 | 10.416506 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 295 | 336 | 13.348998 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 339 | 380 | 15.521181 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 226 | 259 | 15.320672 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 295 | 329 | 10.864685 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 142 | 183 | 12.981398 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 245 | 259 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 245 | 259 | 2.8E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 203 | 217 | 2.8E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 358 | 372 | 2.8E-7 | IPR020472 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62020.1 | Coatomer, alpha subunit. | 0 |
| RefSeq | XP_010919611.1 | coatomer subunit alpha-1 [Elaeis guineensis] | 0 |
| Q9AUR8 | Coatomer subunit alpha-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0711400 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0IF46 | Coatomer subunit alpha OS=Cocos nucifera OX=13894 GN=COCNU_07G005410 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology