Basic Information
Locus ID:
gene.Cymno18g02680
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Fizzy-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr18 | 3116517 | 3122252 | - | gene.Cymno18g02680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.23 | 50,921.59 Da | 36.77 | 73.02 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 323 | 361 | 0.028 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 410 | 446 | 1.7E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 284 | 316 | 1.4E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 161 | 447 | 7.33E-56 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 143 | 450 | 1.3E-118 | IPR015943 |
| SMART | SM00320 | WD40_4 | 149 | 190 | 160.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 277 | 316 | 4.7E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 193 | 233 | 1.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 319 | 361 | 0.0034 | IPR001680 |
| SMART | SM00320 | WD40_4 | 407 | 446 | 3.6E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 236 | 273 | 0.29 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 284 | 316 | 10.706503 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 284 | 325 | 12.914561 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 414 | 455 | 14.451798 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 414 | 447 | 11.73468 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 433 | 447 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 105 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22910.1 | FIZZY-related 2. | 0 |
| RefSeq | XP_008783451.1 | protein FIZZY-RELATED 1-like [Phoenix dactylifera] | 0 |
| Q9M7I2 | B-type cell cycle switch protein ccs52A OS=Medicago truncatula OX=3880 GN=CCS52A PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7BQT9 | protein FIZZY-RELATED 1-like OS=Phoenix dactylifera OX=42345 GN=LOC103702694 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology