Basic Information
Locus ID:
gene.Cymno18g02580
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr18 | 2915555 | 2917392 | - | gene.Cymno18g02580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.85 | 40,634.06 Da | 51.00 | 74.89 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 39 | 121 | 2.95609E-48 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 263 | 327 | 6.43633E-18 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 263 | 330 | 1.6E-11 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 40 | 121 | 2.7E-19 | IPR001606 |
| SUPERFAMILY | SSF47095 | HMG-box | 260 | 332 | 1.03E-18 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 23 | 132 | 9.55E-33 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 245 | 344 | 5.5E-18 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 14 | 129 | 1.9E-29 | IPR036431 |
| SMART | SM00501 | bright_3 | 35 | 126 | 1.5E-33 | IPR001606 |
| SMART | SM00398 | hmgende2 | 262 | 331 | 1.0E-12 | IPR009071 |
| SMART | SM01014 | ARID_2 | 31 | 121 | 5.7E-30 | - |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 263 | 330 | 14.648644 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 34 | 125 | 27.618818 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 268 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76110.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_029120126.1 | high mobility group B protein 9-like [Elaeis guineensis] | 0 |
| Q9SGS2 | High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6P5EA86 | high mobility group B protein 9-like OS=Ananas comosus OX=4615 GN=LOC109703786 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology