Basic Information
Locus ID:
gene.Cymno18g01080
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
receptor kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr18 | 778070 | 779914 | - | gene.Cymno18g01080 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 66,122.81 Da | 26.95 | 98.86 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 35 | 77 | 7.1E-4 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 318 | 532 | 8.6E-26 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 289 | 590 | 1.11E-55 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 33 | 205 | 1.76E-26 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 35 | 222 | 6.2E-42 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 387 | 605 | 4.1E-45 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 273 | 386 | 7.5E-31 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 312 | 592 | 28.188156 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G27190.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_010091928.1 | inactive LRR receptor-like serine/threonine-protein kinase BIR2 [Morus notabilis] | 0 |
| O04567 | Probable inactive receptor kinase At1g27190 OS=Arabidopsis thaliana OX=3702 GN=At1g27190 PE=1 SV=1 | 0 | |
| TrEMBL | W9QXA3 | Putative inactive receptor kinase OS=Morus notabilis OX=981085 GN=L484_010493 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg17839, jg30500, jg30502, jg40308 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_16615, gene_3693 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah013397, Ah029174 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_6g155300, BVRB_7g166660 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg1126, Sbi_jg35457, Sbi_jg43040, Sbi_jg45642 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg11486, Seu_jg3577 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00002038, GOSA_00022852 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl35794, Sgl41103, Sgl74292, Sgl74320, Sgl77857 |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000002822, gene:ENSEOMG00000006227 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.6AG0006720, CQ.Regalona.r1.6BG0007130 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30174030, pistato.v30224150 |
| Apiaceae | Apium graveolens | 2 | Ag4G00834, Ag6G00361 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G013030 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103714760 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_09.1147.V1.1, AsparagusV1_09.625.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri13G01787, Ftri18G19386, Ftri18G26232, FtriNA14638 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G27190.1, AT1G69990.1, AT3G28450.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10003844m.g.v1.0, Thhalv10009684m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g21580.v2.2, Sp2g17210.v2.2, Sp5g25100.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g068240.2N, BniB03g047720.2N, BniB04g006930.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0879 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl02G1823, Cgl02G1825, Cgl07G0925 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno02g06540, gene.Cymno03g08730, gene.Cymno18g01080 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g26240 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.120, evm.TU.LG03.873 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00023422 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G38344, Lb2G12998 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0312890, gene-QOZ80_4BG0344050 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0176990.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_044785 |
| Poaceae | Oryza coarctata | 2 | Oco07G009110, Oco08G009010 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g41030.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G141100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0307203 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr02G026870, Chr08G021260, Chr12G021780, Chr14G005300 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G598000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG050070, gene_TRIDC2BG053060 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G346000.1.cds1, TraesCS2B02G364400.1.cds1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb079130_P001, Zm00001eb101970_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-36928, nbis-gene-7355 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g19946, Zma_g21497 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG02.2563, evm.TU.LG05.781, evm.TU.LG13.277 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g21260 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_15_RagTag.672, evm.TU.Scaffold_17_RagTag.299 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-15038, nbisL1-mrna-23030, nbisL1-mrna-26851 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-4109, nbisL1-mrna-5994, nbisL1-mrna-677 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-14825, nbisL1-mrna-15711, nbisL1-mrna-181 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000001l.204, add.evm.TU.utg000011l.52 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00006698, Maker00007139 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-21206, nbisL1-mrna-21476 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-17394, nbisL1-mrna-17828 |
| Salicaceae | Populus euphratica | 5 | populus_peu01033, populus_peu09715, populus_peu23304 ... |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132621722, gene-LOC132625005, gene-LOC132626556 ... |
| Solanaceae | Solanum chilense | 3 | SOLCI002230100, SOLCI003763100, SOLCI005193700 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107008771, gene-LOC107011426, gene-LOC107018701 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.26274_chr11_-, STRG.29502_chr10_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G1216, TC12G0178 |