Basic Information
Locus ID:
gene.Cymno18g00910
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
domain phosphoinositide-interacting protein 3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr18 | 661361 | 668817 | + | gene.Cymno18g00910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.33 | 43,406.11 Da | 48.65 | 79.04 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 263 | 290 | 0.0043 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 44 | 292 | 1.62E-34 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 211 | 388 | 7.9E-15 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 42 | 210 | 7.5E-6 | IPR015943 |
| SMART | SM00320 | WD40_4 | 38 | 72 | 200.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 124 | 159 | 90.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 206 | 246 | 0.011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 249 | 290 | 0.024 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_010938432.2 | autophagy-related protein 18a [Elaeis guineensis] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9S7G3 | autophagy-related protein 18a OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105057501 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology