Basic Information
Locus ID:
gene.Cymno17g05250
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr17 | 12195792 | 12199886 | + | gene.Cymno17g05250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 44,088.10 Da | 46.06 | 66.63 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 336 | 376 | 1.90288E-27 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 335 | 381 | 2.8E-14 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 336 | 382 | 8.24E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 321 | 386 | 2.1E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 337 | 375 | 0.0072 | IPR001841 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 308 | 387 | 5.8E-8 | IPR017066 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 5 | 68 | 470.0 | IPR017066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 337 | 376 | 11.058237 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 52 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09770.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_020089224.1 | probable E3 ubiquitin-protein ligase LOG2 [Ananas comosus] | 0 |
| Q9S752 | Probable E3 ubiquitin-protein ligase LOG2 OS=Arabidopsis thaliana OX=3702 GN=LOG2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A843UJ38 | RING-type E3 ubiquitin transferase OS=Colocasia esculenta OX=4460 GN=Taro_014793 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology