Basic Information
Locus ID:
gene.Cymno17g05020
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr17 | 12034717 | 12039685 | - | gene.Cymno17g05020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 102,052.52 Da | 42.14 | 83.17 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 541 | 835 | 8.55541E-149 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 227 | 523 | 6.13574E-160 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 546 | 831 | 3.5E-22 | IPR030395 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 234 | 518 | 1.0E-6 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 540 | 836 | 1.31E-45 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 226 | 522 | 3.66E-38 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 225 | 524 | 6.4E-33 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 539 | 836 | 2.1E-47 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 541 | 836 | 28.913305 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 227 | 524 | 26.558475 | IPR030395 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 177 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G58050.1 | SHV3-like 4. | 0 |
| RefSeq | XP_020102403.1 | glycerophosphodiester phosphodiesterase GDPDL7-like [Ananas comosus] | 0 |
| Q9FGT9 | Glycerophosphodiester phosphodiesterase GDPDL6 OS=Arabidopsis thaliana OX=3702 GN=GDPDL6 PE=2 SV=1 | 0 | |
| TrEMBL | A0A835DEJ9 | glycerophosphodiester phosphodiesterase OS=Tetracentron sinense OX=13715 GN=HHK36_013842 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology