Basic Information
Locus ID:
gene.Cymno17g05000
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr17 | 12019034 | 12026575 | - | gene.Cymno17g05000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.78 | 125,186.50 Da | 39.79 | 82.45 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 454 | 488 | 3.7E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 916 | 948 | 0.0042 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 350 | 664 | 5.31E-39 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 543 | 1096 | 1.02E-34 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 311 | 544 | 5.7E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 567 | 688 | 2.9E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 769 | 1102 | 1.7E-29 | IPR015943 |
| SMART | SM00320 | WD40_4 | 1001 | 1042 | 3.3 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 3.1E-5 | IPR006594 |
| SMART | SM00668 | ctlh | 34 | 92 | 3.1E-15 | IPR006595 |
| SMART | SM00320 | WD40_4 | 341 | 380 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 910 | 949 | 3.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 535 | 578 | 31.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 827 | 864 | 44.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 447 | 488 | 3.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 402 | 441 | 12.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 491 | 532 | 0.067 | IPR001680 |
| SMART | SM00320 | WD40_4 | 867 | 907 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 581 | 621 | 5.8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 454 | 497 | 10.876051 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.297499 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 917 | 948 | 11.778342 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.968365 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 917 | 948 | 9.836508 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1098 | 1132 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1110 | 1132 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.2 | TOPLESS-related 1. | 0 |
| RefSeq | XP_038988989.1 | protein TPR3 [Phoenix dactylifera] | 0 |
| Q10NY2 | Protein TPR3 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D1XVX1 | Protein TOPLESS OS=Anthurium amnicola OX=1678845 GN=TPL_3 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology