Basic Information
Locus ID:
gene.Cymno17g04920
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr17 | 11847883 | 11854665 | - | gene.Cymno17g04920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.63 | 116,884.48 Da | 51.66 | 59.29 | -1.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14135 | STKc_PRP4 | 648 | 964 | 0.0 | IPR044092 |
| Pfam | PF00069 | Protein kinase domain | 651 | 964 | 4.7E-46 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 636 | 978 | 2.83E-73 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 709 | 965 | 4.9E-73 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 619 | 708 | 9.4E-34 | - |
| SMART | SM00220 | serkin_6 | 649 | 964 | 8.3E-71 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 649 | 964 | 36.498947 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 776 | 788 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 156 | 525 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 303 | 524 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 201 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 288 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 59 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 156 | 174 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 84 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 37 | - | - |
| Coils | Coil | Coil | 489 | 509 | - | - |
| Coils | Coil | Coil | 463 | 483 | - | - |
| Coils | Coil | Coil | 59 | 79 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25840.2 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_020090667.1 | serine/threonine-protein kinase prpf4B isoform X4 [Ananas comosus] | 0 |
| Q13523 | Serine/threonine-protein kinase PRP4 homolog OS=Homo sapiens OX=9606 GN=PRP4K PE=1 SV=3 | 0 | |
| TrEMBL | A0A6P5F4V8 | non-specific serine/threonine protein kinase OS=Ananas comosus OX=4615 GN=LOC109711783 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg34921, jg9170 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_24403, gene_3994 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah025858 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g142180 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13811, Sbi_jg52114 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9732 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018876 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl34165, Sgl39796 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000000812, gene:ENSEOMG00000000895 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0014830, CQ.Regalona.r1.6BG0015640 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30223410, pistato.v30225530 |
| Apiaceae | Apium graveolens | 2 | Ag6G00495, Ag8G02052 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G005120, COCNU_03G010120 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103695498, gene-LOC103700973 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_06.1520.V1.1, AsparagusV1_08.2886.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G06048 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G13350.2, AT3G25840.1, AT3G53640.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003622m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g15070.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g066460.2N, BniB04g013650.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2056 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2194 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno13g01930, gene.Cymno17g04920 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0999s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g18470 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.530 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00027452, Pov_00039566 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G01554 |
| Poaceae | Echinochloa crus-galli | 5 | AH05.4248, AH08.1004, BH05.4346, CH05.4576, CH08.1328 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0219280, gene-QOZ80_3BG0264540 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0337020.1, HORVU.MOREX.r3.5HG0419470.1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_000295, gene-QYE76_062451, gene-QYE76_062456 ... |
| Poaceae | Oryza coarctata | 3 | Oco05G021510, Oco23G011480, Oco24G011300 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g44330.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G172700 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr04G020200, Chr06G021180, Chr19G006870, Chr20G007800 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G081100, Tel5E01G000800 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC4BG007020, gene_TRIDC5AG000690 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS4A02G269100.1, TraesCS4B02G044900.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb033230_P002, Zm00001eb133880_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g26220 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.653, evm.TU.LG21.340 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g04300 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_17_RagTag.923 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-23649 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5972 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21938 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000013l.516 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004345 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10908 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23137 |
| Salicaceae | Populus euphratica | 3 | populus_peu07050, populus_peu21014, populus_peu30998 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132606093, gene-LOC132607627, gene-LOC132641794 |
| Solanaceae | Solanum chilense | 1 | SOLCI003188400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107020321, gene-LOC107021947 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10230 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G2150, TC04G0215 |
| Zosteraceae | Zostera marina | 1 | Zosma05g19200.v3.1 |