Basic Information
Locus ID:
gene.Cymno17g04240
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr17 | 11369861 | 11381322 | + | gene.Cymno17g04240 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.27 | 71,409.41 Da | 58.40 | 86.57 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 396 | 444 | 2.73684E-15 | - |
| Pfam | PF12906 | RING-variant domain | 396 | 443 | 2.4E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 392 | 447 | 5.44E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 380 | 451 | 1.2E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 395 | 444 | 5.1E-19 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 388 | 450 | 18.716236 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 112 | 133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 297 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 603 | 629 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 110 | 244 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 185 | 226 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 270 | 297 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 605 | 629 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 368 | 387 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_042518983.1 | uncharacterized protein LOC122092765 isoform X1 [Macadamia integrifolia] | 0 |
| TrEMBL | A0A1D1Y906 | E3 ubiquitin-protein ligase MARCH7 OS=Anthurium amnicola OX=1678845 GN=March7_4 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology