Basic Information
Locus ID:
gene.Cymno17g01530
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr17 | 1759270 | 1760280 | - | gene.Cymno17g01530 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.13 | 26,772.34 Da | 32.37 | 92.26 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 15 | 184 | 3.8E-29 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 9 | 209 | 6.79E-51 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 3 | 193 | 7.2E-58 | - |
| SMART | SM00220 | serkin_6 | 1 | 187 | 1.2E-6 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 193 | 25.700571 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 39 | 51 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56130.3 | - | 0 |
| RefSeq | XP_010911396.2 | probable LRR receptor-like serine/threonine-protein kinase At1g56140, partial [Elaeis guineensis] | 0 |
| C0LGH2 | Probable LRR receptor-like serine/threonine-protein kinase At1g56130 OS=Arabidopsis thaliana OX=3702 GN=At1g56130 PE=2 SV=2 | 0 | |
| TrEMBL | A0A834ZP61 | Protein kinase domain-containing protein OS=Tetracentron sinense OX=13715 GN=HHK36_004762 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1BG0012270 |
| Anacardiaceae | Pistacia vera | 10 | pistato.v30031320, pistato.v30031620, pistato.v30074900 ... |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G018920 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g41770.v2.2 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1812 |
| Cymodoceaceae | Cymodocea nodosa | 5 | gene.Cymno17g01410, gene.Cymno17g01450, gene.Cymno17g01460 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0190270.1 |
| Poaceae | Oryza coarctata | 1 | Oco08G015500 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-5847 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc10g09750, gene.Posoc10g10990, gene.Posoc10g11090 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1005_RagTag.1, evm.TU.Scaffold_709_RagTag.2 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14844 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7639 |
| Rhizophoraceae | Rhizophora apiculata | 4 | nbisL1-mrna-19507, nbisL1-mrna-6654, nbisL1-mrna-6655 ... |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-12777, nbisL1-mrna-12791 |
| Zosteraceae | Zostera marina | 1 | Zosma06g18860.v3.1 |