Basic Information
Locus ID:
gene.Cymno16g05750
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr16 | 13379648 | 13387368 | + | gene.Cymno16g05750 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.29 | 175,833.66 Da | 43.13 | 102.78 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 997 | 1291 | 2.81552E-89 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1314 | 1534 | 8.39113E-125 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 365 | 653 | 6.56776E-93 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 679 | 879 | 4.43636E-107 | - |
| Pfam | PF00005 | ABC transporter | 1333 | 1481 | 1.6E-28 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 1034 | 1243 | 3.8E-30 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 697 | 831 | 6.2E-17 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 365 | 632 | 7.1E-29 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 672 | 895 | 8.27E-56 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1308 | 1542 | 3.04E-66 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 984 | 1296 | 6.67E-47 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 359 | 661 | 7.19E-35 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 677 | 908 | 2.0E-69 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 349 | 662 | 6.0E-50 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 961 | 1297 | 6.5E-54 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1299 | 1552 | 6.8E-81 | IPR027417 |
| SMART | SM00382 | AAA_5 | 706 | 879 | 6.2E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1342 | 1534 | 2.2E-13 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 1006 | 1279 | 31.040356 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 679 | 902 | 22.449089 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 364 | 645 | 33.909569 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1318 | 1550 | 16.880222 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 804 | 818 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 918 | 932 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 918 | 973 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 938 | 973 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60160.1 | multidrug resistance-associated protein 9. member of MRP subfamily | 0 |
| RefSeq | XP_038975230.1 | putative ABC transporter C family member 15 [Phoenix dactylifera] | 0 |
| Q9M1C7 | ABC transporter C family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCC9 PE=2 SV=2 | 0 | |
| TrEMBL | A0A1D1Z236 | ABC transporter C family member 9 OS=Anthurium amnicola OX=1678845 GN=ABCC9_1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology