Basic Information
Locus ID:
gene.Cymno16g05000
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr16 | 12774377 | 12809896 | + | gene.Cymno16g05000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.89 | 78,872.78 Da | 39.09 | 78.99 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 236 | 292 | 1.80987E-30 | - |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 238 | 292 | 3.7E-10 | IPR023780 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 303 | 662 | 7.3E-36 | IPR001525 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 128 | 663 | 2.74E-74 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 227 | 296 | 6.05E-12 | IPR016197 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 236 | 681 | 4.8E-206 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 1 | 72 | 8.5E-19 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 109 | 216 | 2.1E-13 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 455 | 629 | 4.8E-206 | - |
| SMART | SM00298 | chromo_7 | 236 | 295 | 2.9E-10 | IPR000953 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 305 | 660 | 5.0E-30 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 1 | 87 | 12.482867 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 128 | 670 | 44.562794 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 237 | 293 | 11.761101 | IPR000953 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 260 | 280 | - | IPR023779 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 307 | 319 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 396 | 409 | 1.9E-10 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 129 | 145 | 1.9E-10 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 350 | 364 | 1.9E-10 | IPR001525 |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.2 | - | 0 |
| RefSeq | XP_010908353.1 | DNA (cytosine-5)-methyltransferase CMT2 isoform X1 [Elaeis guineensis] | 0 |
| Q5KQL9 | DNA (cytosine-5)-methyltransferase CMT2 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A1D1YKA9 | DNA (Cytosine-5)-methyltransferase CMT2 OS=Anthurium amnicola OX=1678845 GN=CMT2_5 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology