Basic Information
Locus ID:
gene.Cymno16g04810
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Leucine-rich repeats, outliers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr16 | 12608088 | 12610229 | + | gene.Cymno16g04810 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.58 | 71,816.29 Da | 32.87 | 102.51 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 40 | 71 | 2.0E-7 | IPR001810 |
| Pfam | PF13516 | Leucine Rich repeat | 583 | 606 | 0.31 | IPR001611 |
| SUPERFAMILY | SSF81383 | F-box domain | 36 | 73 | 2.22E-9 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 177 | 395 | 8.37E-29 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 378 | 658 | 5.76E-25 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 290 | 366 | 3.2E-6 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 467 | 667 | 5.1E-28 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 367 | 453 | 3.7E-8 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 38 | 76 | 1.0E-8 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 139 | 271 | 3.8E-18 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 378 | 403 | 0.39 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 404 | 429 | 620.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 610 | 635 | 64.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 218 | 243 | 0.92 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 192 | 217 | 0.0065 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 296 | 320 | 650.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 244 | 269 | 0.002 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 270 | 295 | 10.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 583 | 608 | 0.02 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 530 | 555 | 41.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 557 | 582 | 21.0 | IPR006553 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_010251723.1 | PREDICTED: EIN3-binding F-box protein 1-like [Nelumbo nucifera] | 0 |
| TrEMBL | A0A0K9PR10 | F-box family protein OS=Zostera marina OX=29655 GN=ZOSMA_17G00680 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology