Basic Information
Locus ID:
gene.Cymno16g04280
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr16 | 12149372 | 12154278 | + | gene.Cymno16g04280 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.54 | 42,475.79 Da | 38.15 | 85.81 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 163 | 185 | 0.016 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 196 | 244 | 1.3E-4 | IPR024977 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 20 | 354 | 4.55E-33 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 54 | 367 | 1.3E-61 | IPR015943 |
| SMART | SM00320 | WD40_4 | 148 | 186 | 0.086 | IPR001680 |
| SMART | SM00320 | WD40_4 | 322 | 361 | 34.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 280 | 319 | 5.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 190 | 228 | 0.18 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 196 | 237 | 9.906923 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 53 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50550.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_019707090.2 | SEC12-like protein 2 [Elaeis guineensis] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | A0A0K9NHS1 | Putative Prolactin regulatory element-binding protein OS=Zostera marina OX=29655 GN=ZOSMA_99G00940 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology