Basic Information
Locus ID:
gene.Cymno16g03180
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Protein EARLY FLOWERING
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr16 | 10260066 | 10263791 | + | gene.Cymno16g03180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.13 | 20,956.63 Da | 48.19 | 72.45 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 19 | 145 | 4.71512E-47 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 19 | 147 | 2.6E-30 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 8 | 148 | 2.75E-43 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 2 | 148 | 1.1E-50 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 19 | 150 | 3.8E-37 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 8 | 150 | 50.139141 | IPR001229 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 192 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 192 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.1 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_010924946.1 | jacalin-related lectin 19 isoform X2 [Elaeis guineensis] | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9RF17 | jacalin-related lectin 19 isoform X2 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105047632 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology