Basic Information
Locus ID:
gene.Cymno16g02870
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Protein phosphatase 2C and cyclic nucleotide-binding kinase domain-containing
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr16 | 8645214 | 8677541 | + | gene.Cymno16g02870 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.19 | 119,215.18 Da | 40.91 | 90.20 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00143 | PP2Cc | 108 | 381 | 4.69792E-57 | IPR001932 |
| CDD | cd00038 | CAP_ED | 474 | 584 | 5.91162E-22 | IPR000595 |
| CDD | cd00038 | CAP_ED | 601 | 734 | 2.76867E-10 | IPR000595 |
| Pfam | PF00481 | Protein phosphatase 2C | 121 | 348 | 6.1E-35 | IPR001932 |
| Pfam | PF00069 | Protein kinase domain | 780 | 1018 | 1.2E-32 | IPR000719 |
| Pfam | PF00027 | Cyclic nucleotide-binding domain | 620 | 724 | 8.4E-7 | IPR000595 |
| Pfam | PF00027 | Cyclic nucleotide-binding domain | 493 | 585 | 4.1E-19 | IPR000595 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 775 | 1055 | 3.32E-43 | IPR011009 |
| SUPERFAMILY | SSF81606 | PP2C-like | 75 | 383 | 1.29E-53 | IPR036457 |
| SUPERFAMILY | SSF51206 | cAMP-binding domain-like | 593 | 731 | 1.24E-17 | IPR018490 |
| SUPERFAMILY | SSF51206 | cAMP-binding domain-like | 456 | 585 | 1.19E-24 | IPR018490 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 589 | 743 | 1.9E-21 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 442 | 583 | 8.6E-30 | IPR014710 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 849 | 1034 | 9.5E-60 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 770 | 848 | 9.5E-60 | - |
| Gene3D | G3DSA:3.60.40.10 | - | 83 | 382 | 1.9E-65 | IPR036457 |
| SMART | SM00100 | cnmp_10 | 474 | 598 | 8.2E-14 | IPR000595 |
| SMART | SM00100 | cnmp_10 | 601 | 740 | 0.021 | IPR000595 |
| SMART | SM00332 | PP2C_4 | 84 | 379 | 7.7E-55 | IPR001932 |
| SMART | SM00220 | serkin_6 | 766 | 1018 | 1.1E-21 | IPR000719 |
| ProSiteProfiles | PS50042 | cAMP/cGMP binding motif profile. | 474 | 584 | 24.667601 | IPR000595 |
| ProSiteProfiles | PS50042 | cAMP/cGMP binding motif profile. | 601 | 726 | 16.4032 | IPR000595 |
| ProSiteProfiles | PS51746 | PPM-type phosphatase domain profile. | 92 | 381 | 40.870693 | IPR001932 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 739 | 1018 | 25.742973 | IPR000719 |
| ProSitePatterns | PS01032 | PPM-type phosphatase domain signature. | 127 | 135 | - | IPR000222 |
| PRINTS | PR00103 | cAMP-dependent protein kinase signature | 510 | 524 | 1.3E-6 | - |
| PRINTS | PR00103 | cAMP-dependent protein kinase signature | 546 | 555 | 1.3E-6 | - |
| PRINTS | PR00103 | cAMP-dependent protein kinase signature | 495 | 509 | 1.3E-6 | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G20050.1 | protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases. | 0 |
| RefSeq | XP_019052376.1 | PREDICTED: protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1 [Nelumbo nucifera] | 0 |
| Q9SL76 | Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=At2g20050/At2g20040 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9Q022 | protein-serine/threonine phosphatase OS=Zostera marina OX=29655 GN=ZOSMA_126G00100 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg11200, jg12489, jg27949, jg31641 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_10739, gene_4189 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah014594, Ah020583, Ah020588 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g197060 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg25033, Sbi_jg38175, Sbi_jg6297, Sbi_jg8881 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg15554, Seu_jg19721 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007757 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42270, Sgl47046 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000011728, gene:ENSEOMG00000013583 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.3AG0015740, CQ.Regalona.r1.3BG0016790 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30238060, pistato.v30256950 |
| Apiaceae | Apium graveolens | 3 | Ag1G01922, Ag5G01580, Ag9G01808 |
| Arecaceae | Cocos nucifera | 5 | COCNU_01G017210, COCNU_03G011750, scaffold006566G000010 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103696015, gene-LOC103702537, gene-LOC103710933 ... |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.1954.V1.1, AsparagusV1_05.1050.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri15G12986, Ftri15G27950, Ftri16G23273 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G20050.1, AT3G06270.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10001889m.g.v1.0, Thhalv10021055m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g05190.v2.2, Sp3g33360.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g072800.2N, BniB03g024680.2N, BniB03g069610.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq06G1534, Ceq09G1262, Ceq09G1263 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl06G1588, Cgl09G1350, Cgl09G1351 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno05g05290, gene.Cymno16g02870 |
| Dunaliellaceae | Dunaliella salina | 4 | Dusal.0198s00006.v1.0, Dusal.0198s00007.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate03g16300, gene.Thate06g15990, gene.Thate06g22690 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7053 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG07.1125, evm.TU.LG11.1409 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00003901, Pov_00026243 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb0G38087, Lb1G00112, Lb7G34075 |
| Poaceae | Echinochloa crus-galli | 6 | AH03.3899, AH07.1238, BH03.4187, BH07.1331, CH07.1040 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0109450, gene-QOZ80_2BG0163000 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0119030.1, HORVU.MOREX.r3.6HG0580660.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_029561, gene-QYE76_039209 |
| Poaceae | Oryza coarctata | 4 | Oco03G007740, Oco04G008100, Oco13G014290, Oco14G015130 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g17970.1, LOC_Os07g45170.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G374800, gene-BS78_04G121100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0201921, Pt_Chr0506174 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr09G000460, Chr19G001180, Chr27G016230 |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G286000, Tel3E01G467900, Tel6E01G378600 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC2AG017600, gene_TRIDC2BG021250 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G141100.2, TraesCS2B02G166100.3 ... |
| Poaceae | Zea mays | 3 | Zm00001eb110450_P001, Zm00001eb203570_P004 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-34103 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g15333, Zma_g6975 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG02.2866, evm.TU.LG03.1911, evm.TU.LG14.212 ... |
| Posidoniaceae | Posidonia oceanica | 4 | gene.Posoc01g11120, gene.Posoc01g11140, gene.Posoc05g07970 ... |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_3_RagTag.509, evm.TU.Scaffold_4_RagTag.1922 ... |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-1453, nbisL1-mrna-16014, nbisL1-mrna-25654 ... |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-10370, nbisL1-mrna-14767, nbisL1-mrna-4118 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-4691, nbisL1-mrna-560, nbisL1-mrna-6232 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000008l.1093, evm.TU.utg000011l.404 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00000656, Maker00008137, Maker00012698 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14789, nbisL1-mrna-15370 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-1205, nbisL1-mrna-2063, nbisL1-mrna-3408 |
| Salicaceae | Populus euphratica | 4 | populus_peu07830, populus_peu21959, populus_peu22023 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132641084, gene-LOC132645030 |
| Solanaceae | Solanum chilense | 2 | SOLCI003483600, SOLCI005629700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107008357, gene-LOC107020369 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_13276, gene_8916 |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G0102, TC10G1458 |
| Zosteraceae | Zostera marina | 2 | Zosma01g20530.v3.1, Zosma05g13440.v3.1 |