Basic Information
Locus ID:
gene.Cymno16g02180
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr16 | 2206905 | 2208125 | - | gene.Cymno16g02180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.17 | 45,866.31 Da | 54.98 | 83.23 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 43 | 82 | 3.9E-10 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 39 | 143 | 5.63E-15 | IPR036047 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 104 | 384 | 5.36E-14 | IPR011043 |
| Gene3D | G3DSA:2.120.10.80 | - | 91 | 389 | 8.1E-12 | IPR015915 |
| Gene3D | G3DSA:1.20.1280.50 | - | 37 | 83 | 2.5E-10 | - |
| SMART | SM00256 | fbox_2 | 43 | 83 | 2.1E-9 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 37 | 84 | 11.140122 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61590.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_021887813.1 | F-box/kelch-repeat protein At3g61590 [Carica papaya] | 0 |
| Q9M310 | F-box/kelch-repeat protein At3g61590 OS=Arabidopsis thaliana OX=3702 GN=At3g61590 PE=1 SV=1 | 0 | |
| TrEMBL | A0A843UGB5 | F-box domain-containing protein OS=Colocasia esculenta OX=4460 GN=Taro_017474 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg1976, jg29411, jg29604 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_1668, gene_1789 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah004521, Ah012550, Ah022914 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g003760, BVRB_5g099590 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg23963, Sbi_jg23964, Sbi_jg40679, Sbi_jg50684 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg12234, Seu_jg2239 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00000524, GOSA_00001106 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl10991, Sgl16401, Sgl52140, Sgl57413 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000004711, gene:ENSEOMG00000016016 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0003700, CQ.Regalona.r1.2BG0025630 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30005240 |
| Apiaceae | Apium graveolens | 3 | Ag6G00014, Ag6G01564, Ag8G00619 |
| Arecaceae | Cocos nucifera | 5 | COCNU_02G003740, COCNU_03G012580, COCNU_03G012590 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103708361, gene-LOC103710423, gene-LOC103710870 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2851.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G11034, Ftri13G30825, Ftri5G17491 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G61590.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005970m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g01820.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB06g053100.2N, BniB06g061920.2N, BniB08g075710.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1213 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1252 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno16g02180 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g17350, gene.Thate09g15360 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.769 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00016647 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G22048 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.1131, BH02.2701, CH07.989 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0027310, gene-QOZ80_1BG0077490 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0277120.1.CDS1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_022377, gene-QYE76_054329, gene-QYE76_054333 |
| Poaceae | Oryza coarctata | 4 | Oco01G016310, Oco02G016520, Oco03G007130, Oco04G007450 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g47050.1, LOC_Os02g15950.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_03G218100, gene-BS78_04G111500 ... |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G013760, Chr03G012160, Chr05G020010, Chr06G031900 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G407300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG035720, gene_TRIDC3BG040090 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G239100.1.cds1, TraesCS3B02G267600.1.cds1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb157830_P001, Zm00001eb203860_P002 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-34166, nbis-gene-50935, nbis-gene-9042 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g10800, Zma_g12549, Zma_g15381 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG04.2212, evm.TU.LG04.3312, evm.TU.LG06.92 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g08340 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_4_RagTag.843, evm.TU.Scaffold_5_RagTag.575 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-10771, nbisL1-mrna-10792, nbisL1-mrna-21683 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-17977, nbisL1-mrna-6096 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-10209, nbisL1-mrna-7367 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000003l.77, add.evm.TU.utg000006l.161 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00013321, Maker00017664 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17412, nbisL1-mrna-20789 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-19588, nbisL1-mrna-7229 |
| Salicaceae | Populus euphratica | 2 | populus_peu27612, populus_peu31603 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132640661, gene-LOC132645502 |
| Solanaceae | Solanum chilense | 2 | SOLCI003518500, SOLCI004008600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107014958, gene-LOC107019731 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.28955_chr11_-, STRG.8597_chr06_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G2170, TC09G2286 |
| Zosteraceae | Zostera marina | 3 | Zosma01g09520.v3.1, Zosma06g24210.v3.1, Zosma06g24300.v3.1 |