Basic Information
Locus ID:
gene.Cymno16g00580
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr16 | 407542 | 419739 | - | gene.Cymno16g00580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.15 | 101,978.45 Da | 33.87 | 92.58 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 17 | 297 | 9.85981E-64 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 177 | 215 | 2.4E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 220 | 256 | 3.2E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 91 | 127 | 1.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 133 | 171 | 4.5E-4 | IPR001680 |
| Pfam | PF04053 | Coatomer WD associated region | 319 | 762 | 3.2E-157 | IPR006692 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 322 | 483 | 1.1E-5 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 3 | 297 | 2.33E-76 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 11 | 300 | 2.7E-110 | IPR015943 |
| Gene3D | G3DSA:1.25.40.470 | - | 589 | 797 | 1.2E-75 | - |
| SMART | SM00320 | WD40_4 | 46 | 85 | 0.83 | IPR001680 |
| SMART | SM00320 | WD40_4 | 174 | 215 | 7.5E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 88 | 127 | 4.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 218 | 257 | 3.4E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 4 | 43 | 0.45 | IPR001680 |
| SMART | SM00320 | WD40_4 | 131 | 171 | 2.8E-8 | IPR001680 |
| PIRSF | PIRSF005567 | Beta'-COP | 2 | 888 | 0.0 | IPR016453 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 11 | 52 | 8.971213 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 181 | 218 | 10.943775 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 138 | 180 | 13.315579 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 225 | 266 | 15.688272 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 225 | 256 | 12.631039 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 95 | 127 | 10.363778 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 95 | 127 | 12.446706 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 138 | 172 | 10.68014 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 181 | 224 | 14.518635 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 244 | 258 | 8.8E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 202 | 216 | 8.8E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 158 | 172 | 8.8E-7 | IPR020472 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79990.1 | structural molecules. | 0 |
| RefSeq | XP_043723865.1 | coatomer subunit beta'-1 isoform X1 [Telopea speciosissima] | 0 |
| Q6H8D5 | Coatomer subunit beta'-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0209100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9RMC5 | Coatomer subunit beta' OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105047897 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology