Basic Information
Locus ID:
gene.Cymno16g00230
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr16 | 159080 | 164356 | + | gene.Cymno16g00230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 37,665.99 Da | 39.74 | 92.19 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 78 | 129 | 2.68585E-20 | - |
| Pfam | PF12906 | RING-variant domain | 78 | 128 | 6.3E-12 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 74 | 133 | 3.3E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 62 | 139 | 1.3E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 77 | 129 | 2.0E-18 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 70 | 135 | 21.3106 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 45 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11020.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_043723120.1 | uncharacterized protein LOC122670343 isoform X3 [Telopea speciosissima] | 0 |
| TrEMBL | A0A8B9ANP7 | uncharacterized protein LOC103721143 isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103721143 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology