Basic Information
Locus ID:
gene.Cymno15g07660
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Short Name:
CMT1
Description:
DNA (cytosine-5)-methyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr15 | 15429940 | 15443961 | - | gene.Cymno15g07660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 99,993.02 Da | 40.90 | 76.73 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 433 | 489 | 5.67677E-27 | - |
| Pfam | PF01426 | BAH domain | 189 | 274 | 6.5E-9 | IPR001025 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 499 | 857 | 1.3E-30 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 450 | 484 | 4.9E-8 | IPR023780 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 333 | 858 | 2.17E-77 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 424 | 489 | 2.16E-12 | IPR016197 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 336 | 876 | 6.3E-247 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 652 | 824 | 6.3E-247 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 126 | 286 | 3.6E-45 | IPR043151 |
| SMART | SM00439 | BAH_4 | 187 | 301 | 6.0E-14 | IPR001025 |
| SMART | SM00298 | chromo_7 | 433 | 492 | 1.8E-11 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 187 | 301 | 16.486526 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 434 | 487 | 12.575601 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 334 | 865 | 46.40556 | IPR001525 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 504 | 516 | - | IPR018117 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 457 | 477 | - | IPR023779 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 547 | 561 | 1.0E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 335 | 351 | 1.0E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 593 | 606 | 1.0E-11 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 88 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 409 | 429 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_020103892.1 | DNA (cytosine-5)-methyltransferase CMT3-like [Ananas comosus] | 0 |
| Q9AXT8 | DNA (cytosine-5)-methyltransferase 1 OS=Zea mays OX=4577 GN=MET2A PE=1 SV=1 | 0 | |
| TrEMBL | G4XDS4 | CMT-type DNA-methyltransferase OS=Posidonia oceanica OX=55489 GN=CMT1 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology