Basic Information
Locus ID:
gene.Cymno15g05090
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr15 | 13506856 | 13540998 | + | gene.Cymno15g05090 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.04 | 53,536.89 Da | 29.92 | 85.17 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 404 | 442 | 0.08 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 305 | 337 | 2.1E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 96 | 129 | 3.4E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 95 | 443 | 1.56E-39 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 42 | 192 | 5.2E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 200 | 349 | 2.5E-21 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 350 | 450 | 2.1E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 395 | 443 | 0.0052 | IPR001680 |
| SMART | SM00320 | WD40_4 | 298 | 337 | 9.2E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 209 | 245 | 30.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 91 | 130 | 2.4E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 248 | 287 | 9.2 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 305 | 339 | 12.868311 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 305 | 339 | 15.621435 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 98 | 139 | 11.477578 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 98 | 132 | 9.282875 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 324 | 338 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 57 | 89 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00090.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_010918319.1 | transducin beta-like protein 2 [Elaeis guineensis] | 0 |
| Q9Y4P3 | Transducin beta-like protein 2 OS=Homo sapiens OX=9606 GN=TBL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D1YIL3 | Transducin beta-like protein 2 OS=Anthurium amnicola OX=1678845 GN=TBL2_1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg29252 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23224 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4315, Sbi_jg49510 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5736 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00000291, GOSA_00000292 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11276, Sgl16670 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014824, gene:ENSEOMG00000035254 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0006320, CQ.Regalona.r1.2BG0023410 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30000790, pistato.v30002990 |
| Apiaceae | Apium graveolens | 1 | Ag10G00264 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G014190, scaffold045784G000010 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1137.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G05024 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G00090.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028676m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g00150.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g042270.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G0490, Ceq02G0502 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0522 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g05090 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0002s00077.v1.0, Dusal.0466s00009.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g09600 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2546 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.184 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014905 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G10583, Lb2G15076 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.638, BH01.86, CH09.3281 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0207520, gene-QOZ80_3BG0252580 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0537090.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_059808 |
| Poaceae | Oryza coarctata | 3 | Oco05G029440, Oco06G030430, Oco15G009250 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g64110.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G003200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0106798, Pt_Chr0106866 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G000090, Chr04G032940, Chr07G031910, Chr12G038240 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G884600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG047950, gene_TRIDC5BG083110 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G316800.1, TraesCS5B02G562100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb065090_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-15697, nbis-gene-16803 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g16, Zma_g2322 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG04.2378 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g07250 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.353 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21704 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2805 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7149 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.330 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009925 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6853 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12686 |
| Salicaceae | Populus euphratica | 2 | populus_peu27845, populus_peu31778 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645704 |
| Solanaceae | Solanum chilense | 1 | SOLCI005187200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107003232 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.25250_chr11_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2668 |
| Zosteraceae | Zostera marina | 1 | Zosma06g05140.v3.1 |