Basic Information
Locus ID:
gene.Cymno15g04730
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Short Name:
NTMC2T4.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr15 | 13006419 | 13052903 | + | gene.Cymno15g04730 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.89 | 54,676.41 Da | 30.71 | 106.77 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 265 | 364 | 1.7946E-27 | - |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 68 | 247 | 3.2E-20 | IPR039010 |
| Pfam | PF00168 | C2 domain | 263 | 358 | 8.9E-24 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 261 | 390 | 1.25E-28 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 258 | 416 | 2.4E-32 | IPR035892 |
| SMART | SM00239 | C2_3c | 264 | 361 | 9.7E-21 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 66 | 248 | 24.928461 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 246 | 364 | 21.628176 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 280 | 292 | 2.0E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 305 | 318 | 2.0E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 327 | 335 | 2.0E-5 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 475 | 499 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 473 | 499 | - | - |
| Coils | Coil | Coil | 390 | 417 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61050.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. | 0 |
| RefSeq | XP_043716576.1 | calcium-dependent lipid-binding protein-like isoform X1 [Telopea speciosissima] | 0 |
| Q9LEX1 | Calcium-dependent lipid-binding protein OS=Arabidopsis thaliana OX=3702 GN=CLB PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D1XKH3 | Extended synaptotagmin-1 OS=Anthurium amnicola OX=1678845 GN=Esyt1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology