Basic Information
Locus ID:
gene.Cymno15g04190
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr15 | 11932848 | 12111312 | - | gene.Cymno15g04190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 488,606.13 Da | 44.90 | 92.41 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1972 | 2122 | 2.5E-10 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 4201 | 4276 | 1.4E-7 | IPR009291 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 558 | 779 | 9.4E-28 | IPR031642 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 105 | 1.7E-29 | IPR026854 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 133 | 374 | 1.1E-65 | IPR031646 |
| Pfam | PF00169 | PH domain | 800 | 908 | 1.2E-5 | IPR001849 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2194 | 2340 | 1.7E-11 | IPR009291 |
| SUPERFAMILY | SSF50729 | PH domain-like | 796 | 911 | 3.74E-6 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 796 | 913 | 5.0E-5 | IPR011993 |
| SMART | SM00233 | PH_update | 798 | 911 | 1.4E-4 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 797 | 909 | 8.4664 | IPR001849 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17140.3 | pleckstrin homology (PH) domain-containing protein. | 0 |
| RefSeq | XP_017699200.2 | uncharacterized protein LOC103710761 isoform X1 [Phoenix dactylifera] | 0 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7MUK2 | uncharacterized protein LOC103710761 isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103710761 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology