Basic Information
Locus ID:
gene.Cymno15g04040
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr15 | 10309063 | 10326188 | + | gene.Cymno15g04040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.83 | 136,467.55 Da | 33.33 | 93.62 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 9 | 317 | 5.0818E-74 | - |
| Pfam | PF04053 | Coatomer WD associated region | 343 | 768 | 3.2E-127 | IPR006692 |
| Pfam | PF00400 | WD domain, G-beta repeat | 198 | 231 | 1.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 84 | 121 | 1.0E-7 | IPR001680 |
| Pfam | PF06957 | Coatomer (COPI) alpha subunit C-terminus | 816 | 1214 | 9.5E-157 | IPR010714 |
| Pfam | PF00400 | WD domain, G-beta repeat | 45 | 79 | 6.9E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 126 | 163 | 1.7E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 241 | 276 | 1.9E-5 | IPR001680 |
| SUPERFAMILY | SSF69322 | Tricorn protease domain 2 | 323 | 591 | 4.71E-7 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 4 | 315 | 2.62E-73 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 319 | 7.3E-125 | IPR015943 |
| Gene3D | G3DSA:1.25.40.470 | - | 640 | 812 | 1.4E-63 | - |
| SMART | SM00320 | WD40_4 | 40 | 79 | 7.9E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2 | 37 | 18.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 193 | 232 | 2.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 82 | 121 | 1.9E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 279 | 317 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 237 | 276 | 1.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 124 | 163 | 7.8E-11 | IPR001680 |
| PIRSF | PIRSF003354 | Alpha-COP | 1 | 1210 | 0.0 | IPR016391 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 89 | 121 | 10.838322 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 244 | 285 | 15.554599 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 200 | 241 | 13.348998 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 200 | 234 | 10.864685 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 131 | 164 | 15.320672 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 47 | 79 | 10.442869 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 131 | 164 | 12.631039 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 244 | 277 | 12.182859 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 89 | 130 | 13.649761 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 47 | 88 | 12.714052 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 150 | 164 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 263 | 277 | 1.9E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 108 | 122 | 1.9E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 150 | 164 | 1.9E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 858 | 877 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62020.1 | Coatomer, alpha subunit. | 0 |
| RefSeq | XP_010933642.1 | coatomer subunit alpha-1 [Elaeis guineensis] | 0 |
| Q9AUR8 | Coatomer subunit alpha-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0711400 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0IM86 | Coatomer subunit alpha OS=Cocos nucifera OX=13894 GN=COCNU_10G003710 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology