halophFGD

Basic Information

Locus ID: gene.Cymno15g00910

Species & Taxonomic ID: Cymodocea nodosa & 55448

Genome Assembly: GCA_036874045.1

Description: E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr15	574318	575313	-	gene.Cymno15g00910

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.54	9,893.42 Da	53.22	82.87	-0.11

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID

KEGG Pathway

KO Term:

K04506 (E3 ubiquitin-protein ligase SIAH1 [EC:2.3.2.27])

Pathway:

ko04013 (MAPK signaling pathway - fly) map04013 (MAPK signaling pathway - fly) map04115 (p53 signaling pathway) ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis) ko04310 (Wnt signaling pathway) map04310 (Wnt signaling pathway)

Best hit

Source	Best Hit ID	Description	E-value

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	10	jg1546, jg15980, jg2010, jg2186, jg28982, jg29459, jg29883 ... jg33929, jg36129, jg38135
Aizoaceae	Mesembryanthemum crystallinum	4	gene_12056, gene_2238, gene_23536, gene_3317
Amaranthaceae	Atriplex hortensis	5	Ah003896, Ah016673, Ah018616, Ah022847, Ah032403
Amaranthaceae	Beta vulgaris	4	BVRB_1g003000, BVRB_2g041370, BVRB_3g051920, BVRB_5g098610
Amaranthaceae	Salicornia bigelovii	8	Sbi_jg15074, Sbi_jg24061, Sbi_jg29953, Sbi_jg3934 ... Sbi_jg43416, Sbi_jg49156, Sbi_jg55885, Sbi_jg7904
Amaranthaceae	Salicornia europaea	4	Seu_jg12137, Seu_jg18484, Seu_jg26386, Seu_jg6089
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00000592, GOSA_00004246, GOSA_00010667, GOSA_00020076
Amaranthaceae	Suaeda glauca	9	Sgl01327, Sgl06411, Sgl10900, Sgl16254, Sgl16291, Sgl52251 ... Sgl57504, Sgl66271, Sgl70589
Amaranthaceae	Chenopodium album	13	gene:ENSEOMG00000001476, gene:ENSEOMG00000006778 ... gene:ENSEOMG00000012946, gene:ENSEOMG00000015828, gene:ENSEOMG00000019440, gene:ENSEOMG00000019668, gene:ENSEOMG00000020473, gene:ENSEOMG00000023578, gene:ENSEOMG00000028868, gene:ENSEOMG00000032937, gene:ENSEOMG00000043369, gene:ENSEOMG00000047530, gene:ENSEOMG00000049644
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.1AG0002250, CQ.Regalona.r1.2BG0005840 ... CQ.Regalona.r1.2BG0026280, CQ.Regalona.r1.3BG0005230, CQ.Regalona.r1.5AG0005660, CQ.Regalona.r1.5BG0005950
Anacardiaceae	Pistacia vera	6	pistato.v30005800, pistato.v30054310, pistato.v30164590 ... pistato.v30165060, pistato.v30166020, pistato.v30278480
Apiaceae	Apium graveolens	3	Ag2G02097, Ag5G00987, Ag6G02055
Arecaceae	Cocos nucifera	8	COCNU_02G004090, COCNU_03G003470, COCNU_03G011420 ... COCNU_04G007070, COCNU_06G005070, COCNU_08G005570, COCNU_12G004580, COCNU_14G003300
Arecaceae	Phoenix dactylifera	11	gene-LOC103696810, gene-LOC103702515, gene-LOC103705037 ... gene-LOC103705078, gene-LOC103707368, gene-LOC103708627, gene-LOC103711185, gene-LOC103714207, gene-LOC103719820, gene-LOC103720723, gene-LOC103724054
Asparagaceae	Asparagus officinalis	5	AsparagusV1_01.502.V1.1, AsparagusV1_04.926.V1.1 ... AsparagusV1_05.1986.V1.1, AsparagusV1_05.75.V1.1, AsparagusV1_07.1619.V1.1
Asteraceae	Flaveria trinervia	9	Ftri11G33540, Ftri12G25936, Ftri12G27276, Ftri15G19230 ... Ftri3G33411, Ftri4G21539, Ftri6G15835, FtriNA09472, FtriNA30346
Brassicaceae	Arabidopsis thaliana	5	AT2G41980.1, AT3G58040.1, AT3G61790.1, AT4G27880.1 ... AT5G53360.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10006100m.g.v1.0, Thhalv10006115m.g.v1.0 ... Thhalv10016984m.g.v1.0, Thhalv10025710m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp4g24250.v2.2, Sp5g01580.v2.2, Sp5g04680.v2.2 ... Sp7g25850.v2.2
Brassicaceae	Brassica nigra	9	BniB01g003720.2N, BniB03g012000.2N, BniB05g009550.2N ... BniB06g052760.2N, BniB06g055270.2N, BniB06g061830.2N, BniB06g063620.2N, BniB08g027310.2N, BniB08g072760.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq04G1188, Ceq05G0866, Ceq05G2167, Ceq09G1625
Casuarinaceae	Casuarina glauca	6	Cgl04G1346, Cgl05G0881, Cgl05G2263, Cgl05G2264, Cgl05G2439 ... Cgl09G1758
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno04g11310, gene.Cymno15g00870, gene.Cymno15g00880 ... gene.Cymno15g00910
Hydrocharitaceae	Thalassia testudinum	5	gene.Thate02g01100, gene.Thate03g14990, gene.Thate05g25560 ... gene.Thate06g07000, gene.Thate08g04460
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-6157, nbisL1-mrna-8496
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG02.1975, evm.TU.LG04.699, evm.TU.LG05.1119 ... evm.TU.LG09.459
Plantaginaceae	Plantago ovata	4	Pov_00006860, Pov_00010834, Pov_00011569, Pov_00039371
Plumbaginaceae	Limonium bicolor	8	Lb0G37756, Lb1G02344, Lb1G02347, Lb2G08140, Lb2G08206 ... Lb3G20713, Lb6G31205, Lb6G31431
Poaceae	Echinochloa crus-galli	16	AH01.3605, AH02.65, AH03.3960, AH05.557, AH07.268, BH01.3952 ... BH02.54, BH03.4264, BH05.7, BH07.1395, BH07.331, CH01.4217, CH02.62, CH03.4574, CH07.1111, CH07.233
Poaceae	Eleusine coracana subsp. coracana	15	gene-QOZ80_1AG0000510, gene-QOZ80_1BG0048960 ... gene-QOZ80_1BG0055840, gene-QOZ80_2AG0100460, gene-QOZ80_2AG0109980, gene-QOZ80_2BG0153800, gene-QOZ80_2BG0163500, gene-QOZ80_3AG0248610, gene-QOZ80_3BG0279620, gene-QOZ80_5AG0400740, gene-QOZ80_5BG0449340, gene-QOZ80_6AG0531020, gene-QOZ80_6BG0484840, gene-QOZ80_7AG0580280, gene-QOZ80_7BG0611370
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.1HG0034990.1, HORVU.MOREX.r3.2HG0116790.1 ... HORVU.MOREX.r3.3HG0249640.1, HORVU.MOREX.r3.6HG0553110.1, HORVU.MOREX.r3.7HG0711610.1
Poaceae	Lolium multiflorum	5	gene-QYE76_010464, gene-QYE76_019984, gene-QYE76_039065 ... gene-QYE76_051628, gene-QYE76_067805
Poaceae	Oryza coarctata	12	Oco01G006080, Oco02G006130, Oco03G001620, Oco03G008120 ... Oco04G001490, Oco04G008480, Oco05G013750, Oco06G012610, Oco09G004960, Oco10G005040, Oco13G014860, Oco14G015670
Poaceae	Oryza sativa	6	LOC_Os01g13370.1, LOC_Os02g03620.1, LOC_Os02g19140.1 ... LOC_Os03g24040.1, LOC_Os05g14860.1, LOC_Os07g46560.1
Poaceae	Paspalum vaginatum	8	gene-BS78_01G351400, gene-BS78_02G377900, gene-BS78_K095500 ... gene-BS78_03G004100, gene-BS78_04G023600, gene-BS78_04G125000, gene-BS78_09G109500, gene-BS78_K147200
Poaceae	Puccinellia tenuiflora	9	Pt_Chr0102737, Pt_Chr0201309, Pt_Chr0201348, Pt_Chr0201882 ... Pt_Chr0201886, Pt_Chr0204830, Pt_Chr0305080, Pt_Chr0402786, Pt_Chr0501440
Poaceae	Sporobolus alterniflorus	17	Chr01G034900, Chr03G000640, Chr06G031480, Chr06G035460 ... Chr07G010970, Chr08G004970, Chr09G000740, Chr0G020910, Chr12G004740, Chr14G017510, Chr15G022750, Chr15G026750, Chr18G004860, Chr19G000870, Chr21G016350, Chr22G012210, Chr24G013240
Poaceae	Thinopyrum elongatum	6	Tel1E01G251100, Tel2E01G268900, Tel3E01G282700 ... Tel4E01G286900, Tel6E01G195300, Tel7E01G585700
Poaceae	Triticum dicoccoides	12	gene_TRIDC1AG020130, gene_TRIDC1BG024370 ... gene_TRIDC2AG015880, gene_TRIDC2BG019180, gene_TRIDC3AG021490, gene_TRIDC3BG026330, gene_TRIDC4AG023470, gene_TRIDC4BG028360, gene_TRIDC6AG010960, gene_TRIDC6BG016160, gene_TRIDC7AG047430, gene_TRIDC7BG040320
Poaceae	Triticum aestivum	17	TraesCS1A02G136400.2, TraesCS1B02G152800.1 ... TraesCS1D02G134000.1, TraesCS2A02G129000.1, TraesCS2B02G151100.1, TraesCS2D02G131700.1, TraesCS3A02G158000.1, TraesCS3B02G185000.1, TraesCS3D02G165600.1, TraesCS4A02G148400.2, TraesCS4D02G164700.1, TraesCS6A02G086800.1, TraesCS6B02G114800.1, TraesCS7A02G332700.1, TraesCS7B02G244800.1, TraesCS7D02G340900.1, TraesCSU02G019700.1
Poaceae	Zea mays	9	Zm00001eb017210_P001, Zm00001eb119060_P001 ... Zm00001eb203310_P002, Zm00001eb231070_P001, Zm00001eb237020_P001, Zm00001eb284450_P001, Zm00001eb297140_P001, Zm00001eb329840_P001, Zm00001eb350310_P001
Poaceae	Zoysia japonica	3	nbis-gene-17894, nbis-gene-24258, nbis-gene-54924
Poaceae	Zoysia macrostachya	8	Zma_g1188, Zma_g12135, Zma_g12610, Zma_g15312, Zma_g27907 ... Zma_g30126, Zma_g7011, Zma_g9492
Portulacaceae	Portulaca oleracea	13	evm.TU.LG01.1549, evm.TU.LG04.2146, evm.TU.LG04.3257 ... evm.TU.LG05.1075, evm.TU.LG06.167, evm.TU.LG10.125, evm.TU.LG11.1674, evm.TU.LG14.803, evm.TU.LG16.342, evm.TU.LG17.124, evm.TU.LG19.1289, evm.TU.LG24.1285, evm.TU.LG25.284
Posidoniaceae	Posidonia oceanica	5	gene.Posoc01g25190, gene.Posoc01g26330, gene.Posoc03g17240 ... gene.Posoc07g01510, gene.Posoc07g01550
Rhizophoraceae	Bruguiera sexangula	7	evm.TU.Scaffold_11_RagTag.47, evm.TU.Scaffold_1_RagTag.669 ... evm.TU.Scaffold_2_RagTag.1642, evm.TU.Scaffold_5_RagTag.622, evm.TU.Scaffold_7_RagTag.1725, evm.TU.Scaffold_8_RagTag.61, evm.TU.Scaffold_9_RagTag.607
Rhizophoraceae	Carallia pectinifolia	7	nbisL1-mrna-10296, nbisL1-mrna-10731, nbisL1-mrna-21607 ... nbisL1-mrna-28444, nbisL1-mrna-3568, nbisL1-mrna-4068, nbisL1-mrna-6341
Rhizophoraceae	Ceriops tagal	8	nbisL1-mrna-13145, nbisL1-mrna-13278, nbisL1-mrna-13816 ... nbisL1-mrna-18922, nbisL1-mrna-19607, nbisL1-mrna-20815, nbisL1-mrna-4818, nbisL1-mrna-6971
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-14018, nbisL1-mrna-14513, nbisL1-mrna-17707 ... nbisL1-mrna-22213, nbisL1-mrna-4180
Rhizophoraceae	Kandelia candel	7	evm.TU.utg000003l.203, evm.TU.utg000005l.352 ... evm.TU.utg000006l.668, evm.TU.utg000009l.318, evm.TU.utg000012l.398, evm.TU.utg000016l.346, evm.TU.utg000018l.946
Rhizophoraceae	Kandelia obovata	6	Maker00003102, Maker00005144, Maker00010096, Maker00011327 ... Maker00013098, Maker00017160
Rhizophoraceae	Rhizophora apiculata	7	nbisL1-mrna-10232, nbisL1-mrna-1700, nbisL1-mrna-235 ... nbisL1-mrna-2748, nbisL1-mrna-3065, nbisL1-mrna-7517, nbisL1-mrna-8399
Rhizophoraceae	Rhizophora mangle	8	nbisL1-mrna-11512, nbisL1-mrna-13449, nbisL1-mrna-16774 ... nbisL1-mrna-22084, nbisL1-mrna-5432, nbisL1-mrna-5633, nbisL1-mrna-7264, nbisL1-mrna-759
Salicaceae	Populus euphratica	8	populus_peu04262, populus_peu04405, populus_peu12322 ... populus_peu26065, populus_peu28022, populus_peu31552, populus_peu35082, populus_peu37645
Solanaceae	Lycium barbarum	8	gene-LOC132604611, gene-LOC132607373, gene-LOC132622729 ... gene-LOC132626025, gene-LOC132632085, gene-LOC132639652, gene-LOC132640696, gene-LOC132645431
Solanaceae	Solanum chilense	8	SOLCI000503600, SOLCI001232000, SOLCI003373100 ... SOLCI003572100, SOLCI004430900, SOLCI004961900, SOLCI005910900, SOLCI006143700
Solanaceae	Solanum pennellii	8	gene-LOC107007831, gene-LOC107008840, gene-LOC107009192 ... gene-LOC107012292, gene-LOC107020962, gene-LOC107021156, gene-LOC107032085, gene-LOC107032576
Tamaricaceae	Reaumuria soongarica	5	STRG.10847_chr07_+, STRG.12546_chr02_-, STRG.23300_chr05_+ ... STRG.28843_chr11_+, STRG.6276_chr04_-
Tamaricaceae	Tamarix chinensis	7	TC01G3093, TC01G4215, TC02G0657, TC03G1970, TC06G0110 ... TC06G1541, TC08G1359
Zosteraceae	Zostera marina	3	Zosma02g02500.v3.1, Zosma02g20290.v3.1, Zosma04g04190.v3.1