Basic Information
Locus ID:
gene.Cymno15g00880
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr15 | 551290 | 556690 | - | gene.Cymno15g00880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.50 | 40,136.58 Da | 49.81 | 66.64 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 68 | 105 | 1.16818E-10 | - |
| Pfam | PF03145 | Seven in absentia protein family | 113 | 298 | 9.4E-35 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 125 | 296 | 4.71E-20 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 58 | 110 | 7.66E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 40 | 124 | 2.0E-6 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 125 | 174 | 4.2E-13 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 175 | 301 | 3.2E-14 | IPR008974 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 124 | 180 | 12.939753 | IPR013010 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_021774440.1 | E3 ubiquitin-protein ligase SINAT5-like [Chenopodium quinoa] | 0 |
| Q8S3N1 | E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis thaliana OX=3702 GN=SINAT5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A835D9S1 | RING-type E3 ubiquitin transferase OS=Tetracentron sinense OX=13715 GN=HHK36_019618 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology