Basic Information
Locus ID:
gene.Cymno15g00440
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
acyl-activating enzyme
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr15 | 281860 | 297474 | - | gene.Cymno15g00440 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 128,949.68 Da | 37.66 | 95.14 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13570 | PQQ-like domain | 1134 | 1162 | 7.3E-4 | IPR025666 |
| Pfam | PF13360 | PQQ-like domain | 838 | 968 | 6.3E-6 | IPR002372 |
| Pfam | PF13360 | PQQ-like domain | 975 | 1113 | 9.7E-6 | IPR002372 |
| Pfam | PF00501 | AMP-binding enzyme | 140 | 508 | 4.6E-46 | IPR000873 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 804 | 1162 | 1.35E-35 | IPR011047 |
| SUPERFAMILY | SSF56801 | Acetyl-CoA synthetase-like | 88 | 612 | 5.36E-81 | - |
| SUPERFAMILY | SSF47336 | ACP-like | 635 | 694 | 2.88E-6 | IPR036736 |
| Gene3D | G3DSA:2.130.10.10 | - | 971 | 1166 | 9.7E-25 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 794 | 970 | 2.4E-29 | IPR015943 |
| Gene3D | G3DSA:3.40.50.12780 | - | 100 | 503 | 2.6E-58 | IPR042099 |
| Gene3D | G3DSA:3.30.300.30 | - | 504 | 621 | 1.4E-21 | - |
| Gene3D | G3DSA:1.10.1200.10 | - | 634 | 694 | 6.4E-7 | IPR036736 |
| SMART | SM00564 | ire1_9 | 945 | 980 | 24.0 | IPR018391 |
| SMART | SM00564 | ire1_9 | 990 | 1021 | 480.0 | IPR018391 |
| SMART | SM00564 | ire1_9 | 822 | 854 | 510.0 | IPR018391 |
| SMART | SM00564 | ire1_9 | 863 | 896 | 0.067 | IPR018391 |
| SMART | SM00564 | ire1_9 | 1032 | 1064 | 10.0 | IPR018391 |
| ProSitePatterns | PS00455 | Putative AMP-binding domain signature. | 250 | 261 | - | IPR020845 |
| ProSitePatterns | PS00012 | Phosphopantetheine attachment site. | 659 | 674 | - | IPR006162 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G35930.4 | - | 0 |
| RefSeq | XP_019701385.1 | putative acyl-activating enzyme 19 isoform X2 [Elaeis guineensis] | 0 |
| F4K1G2 | Putative acyl-activating enzyme 19 OS=Arabidopsis thaliana OX=3702 GN=At5g35930 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7I8L938 | 4-coumarate--CoA ligase OS=Spirodela intermedia OX=51605 GN=SI8410_13017255 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg29781 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13565 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000361 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g119470 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30738, Sbi_jg58523 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28396 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004962 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55005, Sgl60264 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000051801 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0024940, CQ.Regalona.r1.9BG0019990 |
| Apiaceae | Apium graveolens | 1 | Ag1G00359 |
| Arecaceae | Cocos nucifera | 2 | COCNU_08G005370, COCNU_08G005380 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103696082 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.130.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G13832 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G35930.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003545m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g06220.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g017630.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1511 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1544 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g00440 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.3863s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g06730 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1882 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00031236 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G34057 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.77, BH06.81, CH06.74 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6BG0458450 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0639150.1 |
| Poaceae | Lolium multiflorum | 14 | gene-QYE76_017878, gene-QYE76_017879, gene-QYE76_017880 ... |
| Poaceae | Oryza coarctata | 2 | Oco11G000650, Oco12G000540 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g02160.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G008800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0400506, Pt_Chr0402369 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr0G014670, Chr14G000720 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G069200 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC4AG067130, gene_TRIDC7AG003220 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS3D02G491300.2, TraesCS7A02G011700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb378990_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-51211 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g31234 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.1082, evm.TU.LG09.891 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g01200 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_2_RagTag.1748, evm.TU.Scaffold_2_RagTag.1749 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-3057, nbisL1-mrna-3114 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-335 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13941 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.250 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005393 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12781 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16420 |
| Salicaceae | Populus euphratica | 1 | populus_peu19246 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645145 |
| Solanaceae | Solanum chilense | 1 | SOLCI005586200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007647 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.1573_chr01_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0906 |
| Zosteraceae | Zostera marina | 1 | Zosma02g02570.v3.1 |