halophFGD

Basic Information

Locus ID: gene.Cymno15g00330

Species & Taxonomic ID: Cymodocea nodosa & 55448

Genome Assembly: GCA_036874045.1

Description: Pentatricopeptide repeat-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr15	226270	228897	+	gene.Cymno15g00330

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.35	97,398.89 Da	38.84	101.84	0.22

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13041	PPR repeat family	815	858	7.0E-8	IPR002885
Pfam	PF12854	PPR repeat	633	664	2.5E-7	IPR002885
Pfam	PF13041	PPR repeat family	741	790	1.4E-14	IPR002885
Pfam	PF13041	PPR repeat family	249	298	2.3E-10	IPR002885
Pfam	PF01535	PPR repeat	323	349	0.031	IPR002885
Pfam	PF13041	PPR repeat family	424	475	1.1E-12	IPR002885
Pfam	PF13041	PPR repeat family	566	614	4.5E-13	IPR002885
Pfam	PF13041	PPR repeat family	496	544	2.1E-8	IPR002885
Pfam	PF13041	PPR repeat family	355	403	4.1E-7	IPR002885
Pfam	PF13041	PPR repeat family	671	720	1.8E-15	IPR002885
Pfam	PF13041	PPR repeat family	182	228	2.1E-8	IPR002885
SUPERFAMILY	SSF81901	HCP-like	402	606	1.23E-8	-
SUPERFAMILY	SSF81901	HCP-like	567	749	3.66E-9	-
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	735	806	3.8E-17	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	597	665	4.2E-13	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	406	524	6.3E-32	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	525	596	1.5E-17	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	666	734	6.7E-23	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	87	234	9.6E-21	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	807	875	2.8E-11	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	313	405	1.6E-16	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	237	312	1.1E-16	IPR011990
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	358	391	2.0E-5	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	502	532	7.2E-5	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	464	498	1.5E-8	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	428	457	8.8E-6	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	570	602	2.2E-8	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	252	285	3.4E-5	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	183	216	7.0E-4	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	287	318	3.2E-4	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	710	743	5.9E-10	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	674	708	2.2E-9	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	395	426	5.8E-4	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	535	567	2.7E-5	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	744	777	1.1E-6	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	217	250	2.1E-5	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	639	672	7.3E-9	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	815	848	0.0017	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	180	214	9.251395	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	637	671	12.58363	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	847	875	9.273317	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	425	459	10.468099	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	672	706	12.802855	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	777	811	9.404853	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	742	776	11.432693	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	497	531	9.689847	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	532	566	10.544828	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	355	389	10.194067	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	250	284	10.807899	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	390	424	9.832344	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	320	354	8.780059	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	567	601	12.67132	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	462	496	12.726127	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	215	249	10.796938	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	285	319	8.889672	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	707	741	13.833219	IPR002885

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K17964 (leucine-rich PPR motif-containing protein, mitochondrial)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_008802326.2	protein Rf1, mitochondrial-like [Phoenix dactylifera]	0
TrEMBL	A0A0K9Q077	Pentatricopeptide repeat-containing protein OS=Zostera marina OX=29655 GN=ZOSMA_123G00240 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Chenopodium quinoa	1	CQ.Regalona.r1.4AG0007790
Arecaceae	Cocos nucifera	1	scaffold010752G000010
Asparagaceae	Asparagus officinalis	1	AsparagusV1_09.1150.V1.1
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno02g00170, gene.Cymno02g02240, gene.Cymno03g06300 ... gene.Cymno15g00330
Hydrocharitaceae	Thalassia testudinum	5	gene.Thate02g06920, gene.Thate08g09850, gene.Thate08g14280 ... gene.Thate08g21140, gene.Thate09g04990
Poaceae	Echinochloa crus-galli	20	AH01.1459, AH01.1700, AH04.2051, AH06.2011, BH01.1832 ... BH01.1871, BH01.1904, BH01.1913, BH01.1959, BH04.2089, CH01.1979, CH01.1980, CH01.2004, CH01.2019, CH01.2133, CH01.2164, CH03.2508, CH04.2418, CH04.280, Contig3341.1
Poaceae	Eleusine coracana subsp. coracana	20	gene-QOZ80_2AG0112480, gene-QOZ80_2AG0112540 ... gene-QOZ80_2AG0112570, gene-QOZ80_2AG0112590, gene-QOZ80_2AG0113350, gene-QOZ80_2AG0113380, gene-QOZ80_2BG0165660, gene-QOZ80_2BG0165840, gene-QOZ80_2BG0165960, gene-QOZ80_2BG0165970, gene-QOZ80_2BG0166300, gene-QOZ80_2BG0166610, gene-QOZ80_2BG0171980, gene-QOZ80_4AG0321840, gene-QOZ80_4AG0321850, gene-QOZ80_4BG0357420, gene-QOZ80_5AG0366520, gene-QOZ80_5BG0414280, gene-QOZ80_7BG0607290, gene-QOZ80_9BG0713290
Poaceae	Hordeum vulgare	21	HORVU.MOREX.r3.1HG0005110.1.CDS1 ... HORVU.MOREX.r3.1HG0011250.1.CDS1, HORVU.MOREX.r3.1HG0011400.1.CDS1, HORVU.MOREX.r3.1HG0011450.1.CDS1, HORVU.MOREX.r3.1HG0011510.1.CDS1, HORVU.MOREX.r3.1HG0011560.1.CDS1, HORVU.MOREX.r3.1HG0011590.1.CDS1, HORVU.MOREX.r3.1HG0011680.1.CDS1, HORVU.MOREX.r3.1HG0011730.1.CDS1, HORVU.MOREX.r3.1HG0011760.1.CDS1, HORVU.MOREX.r3.1HG0011790.1.CDS1, HORVU.MOREX.r3.1HG0014490.1.CDS1, HORVU.MOREX.r3.1HG0014640.1.CDS1, HORVU.MOREX.r3.1HG0014650.1.CDS1, HORVU.MOREX.r3.1HG0014660.1.CDS1, HORVU.MOREX.r3.1HG0016620.1.CDS1, HORVU.MOREX.r3.6HG0541240.1, HORVU.MOREX.r3.6HG0551520.1.CDS1, HORVU.MOREX.r3.6HG0555030.1.CDS1, HORVU.MOREX.r3.6HG0555060.1.CDS1, HORVU.MOREX.r3.6HG0616090.1.CDS1
Poaceae	Lolium multiflorum	45	gene-QYE76_007092, gene-QYE76_007147, gene-QYE76_007305 ... gene-QYE76_007310, gene-QYE76_007810, gene-QYE76_008963, gene-QYE76_008968, gene-QYE76_008973, gene-QYE76_008975, gene-QYE76_008976, gene-QYE76_008987, gene-QYE76_009002, gene-QYE76_009034, gene-QYE76_009092, gene-QYE76_009093, gene-QYE76_009095, gene-QYE76_009097, gene-QYE76_009104, gene-QYE76_009109, gene-QYE76_009113, gene-QYE76_009326, gene-QYE76_009336, gene-QYE76_009348, gene-QYE76_009351, gene-QYE76_014117, gene-QYE76_016763, gene-QYE76_016764, gene-QYE76_016765, gene-QYE76_017955, gene-QYE76_020091, gene-QYE76_020092, gene-QYE76_020093, gene-QYE76_020094, gene-QYE76_020095, gene-QYE76_020096, gene-QYE76_020102, gene-QYE76_020114, gene-QYE76_020337, gene-QYE76_025544, gene-QYE76_043413, gene-QYE76_053818, gene-QYE76_057962, gene-QYE76_061904, gene-QYE76_063993, gene-QYE76_063995
Poaceae	Oryza coarctata	12	Oco01G006140, Oco02G006190, Oco04G003180, Oco07G003250 ... Oco07G003300, Oco08G003580, Oco16G000440, Oco19G007000, Oco19G007200, Oco19G007340, Oco20G007160, Oco20G007250
Poaceae	Oryza sativa	14	LOC_Os04g28234.2, LOC_Os04g28300.1, LOC_Os08g01640.1 ... LOC_Os08g01650.1, LOC_Os08g01870.1, LOC_Os08g15000.1, LOC_Os10g35090.1, LOC_Os10g35230.1, LOC_Os10g35240.1, LOC_Os10g35260.1, LOC_Os10g35436.1, LOC_Os10g35440.1, LOC_Os10g35640.1, LOC_Os10g35650.1
Poaceae	Paspalum vaginatum	17	gene-BS78_01G189400, gene-BS78_05G011700 ... gene-BS78_05G029200, gene-BS78_05G034100, gene-BS78_05G034200, gene-BS78_05G037400, gene-BS78_05G045700, gene-BS78_05G045800, gene-BS78_05G046300, gene-BS78_05G046500, gene-BS78_05G046600, gene-BS78_05G046900, gene-BS78_05G047400, gene-BS78_05G184700, gene-BS78_05G185100, gene-BS78_05G185600, gene-BS78_06G061400
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0500284, Pt_Chr0500285
Poaceae	Sporobolus alterniflorus	22	Chr06G030060, Chr09G000530, Chr09G000870, Chr09G001200 ... Chr09G001810, Chr0G029500, Chr13G022300, Chr18G000360, Chr22G014480, Chr23G016880, Chr24G001020, Chr24G001150, Chr24G001180, Chr24G015790, Chr25G013150, Chr25G013160, Chr25G013190, Chr25G013350, Chr28G001210, Chr30G012910, Chr30G012960, Chr30G013230
Poaceae	Thinopyrum elongatum	20	Tel1E01G069500, Tel1E01G115200, Tel1E01G115500 ... Tel1E01G115600, Tel1E01G116200, Tel1E01G118600, Tel1E01G119100, Tel1E01G119500, Tel1E01G136600, Tel1E01G136800, Tel1E01G138200, Tel1E01G138700, Tel1E01G139300, Tel1E01G139400, Tel1E01G139700, Tel1E01G152600, Tel2E01G903700, Tel2E01G904000, Tel6E01G188300, Tel6E01G556900
Poaceae	Triticum dicoccoides	49	gene_TRIDC1AG003330, gene_TRIDC1AG003340 ... gene_TRIDC1AG007580, gene_TRIDC1AG007610, gene_TRIDC1AG007780, gene_TRIDC1AG009300, gene_TRIDC1AG010140, gene_TRIDC1AG010250, gene_TRIDC1AG010270, gene_TRIDC1BG004200, gene_TRIDC1BG004230, gene_TRIDC1BG009450, gene_TRIDC1BG009460, gene_TRIDC1BG009470, gene_TRIDC1BG009590, gene_TRIDC1BG009630, gene_TRIDC1BG009650, gene_TRIDC1BG009670, gene_TRIDC1BG009890, gene_TRIDC1BG011380, gene_TRIDC1BG011500, gene_TRIDC1BG011510, gene_TRIDC1BG013060, gene_TRIDC1BG051260, gene_TRIDC2AG073710, gene_TRIDC2AG074240, gene_TRIDC2AG074270, gene_TRIDC2AG074350, gene_TRIDC2BG016010, gene_TRIDC2BG080930, gene_TRIDC2BG080970, gene_TRIDC2BG081010, gene_TRIDC5BG041750, gene_TRIDC6AG001570, gene_TRIDC6AG001580, gene_TRIDC6AG010130, gene_TRIDC6AG012860, gene_TRIDC6AG012880, gene_TRIDC6AG012890, gene_TRIDC6AG013070, gene_TRIDC6AG046880, gene_TRIDC6BG002190, gene_TRIDC6BG002200, gene_TRIDC6BG002210, gene_TRIDC6BG005590, gene_TRIDC6BG017940, gene_TRIDC6BG018300, gene_TRIDC6BG018310, gene_TRIDC6BG054690
Poaceae	Triticum aestivum	126	TraesCS1A02G031600.1.cds1, TraesCS1A02G031700.1.cds1 ... TraesCS1A02G054500.1, TraesCS1A02G054700.1.cds1, TraesCS1A02G054800.1.cds1, TraesCS1A02G055500.1.cds1, TraesCS1A02G055800.1, TraesCS1A02G056000.1.cds1, TraesCS1A02G056105.1, TraesCS1A02G057300.1, TraesCS1A02G057400.1, TraesCS1A02G066600.1.cds1, TraesCS1A02G067400.1.cds1, TraesCS1A02G067600.1.cds1, TraesCS1A02G067700.1.cds1, TraesCS1A02G072982.1.cds1, TraesCS1A02G073600.1.cds1, TraesCS1A02G073800.1.cds1, TraesCS1B02G038200.1.cds1, TraesCS1B02G038300.1.cds1, TraesCS1B02G038400.1.cds1, TraesCS1B02G038500.1.cds1, TraesCS1B02G039100.1.cds1, TraesCS1B02G039200.1.cds1, TraesCS1B02G039620.1, TraesCS1B02G039700.1.cds1, TraesCS1B02G071600.1, TraesCS1B02G071617.1.cds1, TraesCS1B02G071642.1, TraesCS1B02G072300.1.cds1, TraesCS1B02G072400.1.cds1, TraesCS1B02G072700.1.cds1, TraesCS1B02G072900.1.cds1, TraesCS1B02G074600.1.cds1, TraesCS1B02G075000.1.cds1, TraesCS1B02G084563.1.cds1, TraesCS1B02G085900.1.cds1, TraesCS1B02G086000.1, TraesCS1B02G092500.1.cds1, TraesCS1B02G092600.1.cds1, TraesCS1B02G315437.1.cds1, TraesCS1B02G315500.1.cds1, TraesCS1D02G032300.1.cds1, TraesCS1D02G033000.1.cds1, TraesCS1D02G033100.1.cds1, TraesCS1D02G033205.1.cds1, TraesCS1D02G055300.1.cds1, TraesCS1D02G055500.1, TraesCS1D02G056200.1.cds1, TraesCS1D02G056400.1.cds1, TraesCS1D02G056600.1, TraesCS1D02G057800.1.cds1, TraesCS1D02G058000.1.cds1, TraesCS1D02G058200.1.cds1, TraesCS1D02G058517.1.cds1, TraesCS1D02G067980.1, TraesCS1D02G068400.1.cds1, TraesCS1D02G068500.1.cds1, TraesCS1D02G068600.1.cds1, TraesCS1D02G068800.1.cds1, TraesCS1D02G068900.1.cds1, TraesCS1D02G069100.1, TraesCS1D02G075800.1.cds1, TraesCS1D02G076500.1.cds1, TraesCS1D02G076800.1.cds1, TraesCS1D02G076900.1, TraesCS1D02G095200.1, TraesCS2A02G478045.1.cds1, TraesCS2A02G526200.1.cds1, TraesCS2A02G530300.1, TraesCS2A02G530600.1.cds1, TraesCS2A02G530700.1.cds1, TraesCS2B02G126905.1.cds1, TraesCS2B02G560000.1.cds1, TraesCS2B02G560700.1.cds1, TraesCS2B02G560741.1.cds1, TraesCS2D02G477278.1.cds1, TraesCS2D02G532100.1.cds1, TraesCS2D02G532182.1.cds1, TraesCS2D02G532300.1.cds1, TraesCS2D02G532600.1.cds1, TraesCS5B02G250800.1.cds1, TraesCS6A02G014500.1.cds1, TraesCS6A02G014800.1.cds1, TraesCS6A02G015000.1.cds1, TraesCS6A02G015958.1.cds1, TraesCS6A02G099300.1.cds1, TraesCS6A02G099318.1.cds1, TraesCS6A02G099389.1.cds1, TraesCS6A02G099407.1, TraesCS6A02G101100.1.cds1, TraesCS6A02G311600.1.cds1, TraesCS6B02G021200.1.cds1, TraesCS6B02G021500.1.cds1, TraesCS6B02G021600.1.cds1, TraesCS6B02G021641.1.cds1, TraesCS6B02G045200.1.cds1, TraesCS6B02G114312.1.cds1, TraesCS6B02G127200.1.cds1, TraesCS6B02G127400.1.cds1, TraesCS6B02G127457.1.cds1, TraesCS6B02G127500.1.cds1, TraesCS6B02G127557.1.cds1, TraesCS6B02G129100.1, TraesCS6B02G129173.1.cds1, TraesCS6B02G129200.1.cds1, TraesCS6B02G341800.1.cds1, TraesCS6D02G018941.1, TraesCS6D02G047700.1.cds1, TraesCS6D02G076500.1, TraesCS6D02G083100.1.cds1, TraesCS6D02G083112.1.cds1, TraesCS6D02G083130.1.cds1, TraesCS6D02G083300.1.cds1, TraesCS6D02G083400.1.cds1, TraesCS6D02G089400.1.cds1, TraesCS6D02G089500.1, TraesCS6D02G089608.1.cds1, TraesCS6D02G290900.1.cds1, TraesCS7B02G469500.1.cds1, TraesCS7D02G231400.1.cds1, TraesCS7D02G487500.1.cds1, TraesCSU02G089563.1.cds1, TraesCSU02G089700.1.cds1, TraesCSU02G089705.1.cds1, TraesCSU02G090200.1.cds1
Poaceae	Zea mays	9	Zm00001eb065260_P001, Zm00001eb114490_P001 ... Zm00001eb114520_P001, Zm00001eb114600_P001, Zm00001eb114660_P001, Zm00001eb114690_P001, Zm00001eb301710_P001, Zm00001eb345130_P002, Zm00001eb345170_P001
Poaceae	Zoysia japonica	5	nbis-gene-34357, nbis-gene-43947, nbis-gene-49110 ... nbis-gene-7954, nbis-gene-7966
Poaceae	Zoysia macrostachya	7	Zma_g15222, Zma_g15496, Zma_g19491, Zma_g19493, Zma_g19497 ... Zma_g19498, Zma_g21114
Posidoniaceae	Posidonia oceanica	4	gene.Posoc02g30250, gene.Posoc02g34610, gene.Posoc07g00710 ... gene.Posoc07g00950
Salicaceae	Populus euphratica	1	populus_peu19919
Zosteraceae	Zostera marina	4	Zosma02g14330.v3.1, Zosma04g09020.v3.1, Zosma05g28260.v3.1 ... Zosma06g26890.v3.1