Basic Information
Locus ID:
gene.Cymno15g00120
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr15 | 107273 | 108292 | - | gene.Cymno15g00120 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 37,301.33 Da | 62.28 | 70.44 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 155 | 198 | 1.24135E-17 | - |
| Pfam | PF13639 | Ring finger domain | 155 | 198 | 3.3E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 150 | 205 | 7.32E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 131 | 203 | 9.8E-22 | IPR013083 |
| SMART | SM01197 | FANCL_C_2 | 152 | 206 | 0.005 | - |
| SMART | SM00184 | ring_2 | 156 | 197 | 4.5E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 156 | 198 | 12.872856 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 339 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 279 | 295 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 306 | 326 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 275 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G03550.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010933477.1 | E3 ubiquitin-protein ligase Os04g0590900 [Elaeis guineensis] | 0 |
| Q7XLY8 | E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8K0ILA2 | RING-type E3 ubiquitin transferase OS=Cocos nucifera OX=13894 GN=COCNU_10G002640 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology