Basic Information
Locus ID:
gene.Cymno14g08570
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr14 | 14261738 | 14265198 | + | gene.Cymno14g08570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.00 | 53,212.95 Da | 52.61 | 77.53 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 352 | 390 | 0.0019 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 157 | 464 | 1.31E-27 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 123 | 266 | 7.9E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 267 | 417 | 1.2E-17 | IPR015943 |
| SMART | SM00320 | WD40_4 | 349 | 390 | 0.041 | IPR001680 |
| SMART | SM00320 | WD40_4 | 207 | 248 | 0.0026 | IPR001680 |
| SMART | SM00320 | WD40_4 | 305 | 345 | 23.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 261 | 299 | 110.0 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 235 | 249 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 120 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 68 | 85 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_019705581.1 | uncharacterized protein LOC105043567 [Elaeis guineensis] | 0 |
| TrEMBL | A0A1D1YKQ5 | Histone acetyltransferase type B subunit 2 (Fragment) OS=Anthurium amnicola OX=1678845 GN=HAT2_4 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g08570 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g20470 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g13010 |
| Zosteraceae | Zostera marina | 2 | Zosma01g42490.v3.1, Zosma06g01650.v3.1 |