Basic Information
Locus ID:
gene.Cymno14g06370
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr14 | 12532310 | 12534754 | - | gene.Cymno14g06370 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.65 | 28,689.61 Da | 49.19 | 63.20 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 77 | 210 | 1.67617E-47 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 79 | 209 | 3.3E-36 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 71 | 215 | 4.13E-43 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 61 | 225 | 9.1E-47 | IPR016135 |
| SMART | SM00212 | ubc_7 | 71 | 215 | 5.2E-45 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 67 | 215 | 39.564472 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 140 | 156 | - | IPR023313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 212 | 253 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 253 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G41340.1 | ubiquitin conjugating enzyme 4. Belongs to Ubiquitin conjugating enzyme family. Gene expression is developmentally regulated. | 0 |
| RefSeq | XP_010254946.1 | PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa-like [Nelumbo nucifera] | 0 |
| P42748 | Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis thaliana OX=3702 GN=UBC4 PE=2 SV=2 | 0 | |
| TrEMBL | A0A1U7ZLN1 | ubiquitin-conjugating enzyme E2-23 kDa-like OS=Nelumbo nucifera OX=4432 GN=LOC104595765 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology