Basic Information
Locus ID:
gene.Cymno14g05930
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr14 | 12186046 | 12191947 | + | gene.Cymno14g05930 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 31,301.52 Da | 44.80 | 84.20 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02123 | PA_C_RZF_like | 22 | 161 | 1.0848E-40 | IPR044744 |
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 237 | 279 | 5.07216E-19 | - |
| Pfam | PF02225 | PA domain | 65 | 148 | 4.5E-9 | IPR003137 |
| Pfam | PF13639 | Ring finger domain | 237 | 279 | 6.2E-12 | IPR001841 |
| SUPERFAMILY | SSF52025 | PA domain | 76 | 147 | 3.14E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 236 | 283 | 2.15E-17 | - |
| Gene3D | G3DSA:3.50.30.30 | - | 35 | 159 | 7.9E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 195 | 284 | 8.8E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 237 | 278 | 4.5E-10 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 237 | 279 | 12.651561 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66160.2 | receptor homology region transmembrane domain ring H2 motif protein 1. Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles. | 0 |
| RefSeq | XP_008781001.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 1 isoform X1 [Phoenix dactylifera] | 0 |
| Q9M622 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=RMR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PML0 | RING finger protein 13 OS=Zostera marina OX=29655 GN=ZOSMA_1G02880 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology