Basic Information
Locus ID:
gene.Cymno14g05480
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr14 | 11882777 | 11883928 | - | gene.Cymno14g05480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.78 | 40,640.35 Da | 58.37 | 60.86 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 223 | 265 | 7.26806E-25 | - |
| Pfam | PF13639 | Ring finger domain | 223 | 265 | 2.7E-11 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 16 | 49 | 7.7E-15 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 207 | 272 | 3.79E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 186 | 271 | 7.0E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 224 | 264 | 4.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 224 | 265 | 12.017182 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 275 | 295 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 362 | 383 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 342 | 356 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 341 | 383 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 275 | 294 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19950.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_008803049.1 | E3 ubiquitin-protein ligase RING1-like [Phoenix dactylifera] | 0 |
| P0CH30 | E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7CNN0 | RING-type E3 ubiquitin transferase OS=Phoenix dactylifera OX=42345 GN=LOC103716715 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg27555, jg34407, jg5049, jg9711 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_20495, gene_9578 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah016028, Ah038578 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g188770 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25744, Sbi_jg9567 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19070 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00012505, GOSA_00027956 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl65314, Sgl69707, Sgl78061, Sgl80567 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000011796, gene:ENSEOMG00000016051 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.8AG0010720, CQ.Regalona.r1.8BG0013260 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30147660 |
| Apiaceae | Apium graveolens | 3 | Ag1G02146, Ag3G00796, Ag7G01247 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103716715, gene-LOC103722340 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G04233, Ftri1G18141 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G50350.1, AT3G19950.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10011690m.g.v1.0, Thhalv10021059m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g37170.v2.2, Sp3g17970.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g043950.2N, BniB04g060150.2N, BniB07g030890.2N ... |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1887 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno10g09970, gene.Cymno14g05480 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g21710 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-5731, nbisL1-mrna-9401 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.199 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00025356 |
| Poaceae | Echinochloa crus-galli | 5 | AH06.15, BH01.2001, BH06.6, CH01.2115, Contig328.59 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0129000, gene-QOZ80_2BG0184200 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0045490.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_011623, gene-QYE76_011624, gene-QYE76_016900 |
| Poaceae | Oryza coarctata | 3 | Oco12G000060, Oco19G006620, Oco20G006610 |
| Poaceae | Oryza sativa | 2 | LOC_Os06g01200.1, LOC_Os10g34590.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G196800, gene-BS78_10G000300 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0203087, Pt_Chr0404062, Pt_Chr0404081, Pt_Chr0701735 ... |
| Poaceae | Sporobolus alterniflorus | 8 | Chr06G012430, Chr09G011780, Chr0G007400, Chr10G000900 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G295800, Tel2E01G1042000, Tel7E01G005900 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG024720, gene_TRIDC1BG029840 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS1A02G162400.1.cds1, TraesCS1B02G179000.1.cds1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb045300_P001, Zm00001eb221240_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-21100, nbis-gene-51247, nbis-gene-58187 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g13430, Zma_g16241, Zma_g31201 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG02.2286, evm.TU.LG04.2602, evm.TU.LG08.73 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g10310 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.985, evm.TU.Scaffold_2_RagTag.1539 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-3997, nbisL1-mrna-6630 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11533, nbisL1-mrna-17502 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-18929, nbisL1-mrna-21205 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000009l.130, add.evm.TU.utg000016l.382 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005389, Maker00017210 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17836, nbisL1-mrna-21156 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-21724, nbisL1-mrna-21873 |
| Salicaceae | Populus euphratica | 4 | populus_peu13918, populus_peu23113, populus_peu28156 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132602145, gene-LOC132614726, gene-LOC132632399 |
| Solanaceae | Solanum chilense | 2 | SOLCI002283300, SOLCI006293000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107015510, gene-LOC107016024 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.1529_chr01_-, STRG.17170_chr08_+ |
| Tamaricaceae | Tamarix chinensis | 4 | TC05G0977, TC05G1015, TC07G1561, TC09G1766 |
| Zosteraceae | Zostera marina | 1 | Zosma03g15850.v3.1 |