Basic Information
Locus ID:
gene.Cymno14g04760
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr14 | 11407720 | 11415592 | + | gene.Cymno14g04760 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 49,884.38 Da | 40.72 | 87.53 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00023 | Ankyrin repeat | 111 | 139 | 0.0022 | IPR002110 |
| Pfam | PF13857 | Ankyrin repeats (many copies) | 173 | 219 | 3.9E-6 | - |
| Pfam | PF13857 | Ankyrin repeats (many copies) | 222 | 263 | 2.4E-7 | - |
| Pfam | PF13637 | Ankyrin repeats (many copies) | 46 | 98 | 1.8E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 316 | 379 | 9.81E-6 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 14 | 275 | 2.64E-48 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 7 | 145 | 1.4E-31 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 155 | 271 | 7.2E-22 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 301 | 382 | 1.7E-6 | IPR013083 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 0.074 | IPR002110 |
| SMART | SM00248 | ANK_2a | 111 | 143 | 0.73 | IPR002110 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 2.6E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 179 | 208 | 2.9E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 222 | 254 | 1.3E-4 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 111 | 132 | 9.356852 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 179 | 211 | 11.16695 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 179 | 208 | 10.709951 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 222 | 248 | 10.975266 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 77 | 109 | 8.76305 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 321 | 373 | 9.096088 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 13.469215 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 222 | 254 | 11.35392 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 14.58583 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 111 | 132 | 9.37738 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 336 | 345 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 112 | 127 | 5.9E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 195 | 209 | 5.9E-5 | IPR002110 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 438 | 465 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_021648639.1 | E3 ubiquitin-protein ligase XBAT33-like [Hevea brasiliensis] | 0 |
| Q4FE45 | E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana OX=3702 GN=XBAT33 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1D1Z1Z4 | E3 ubiquitin-protein ligase XBAT33 OS=Anthurium amnicola OX=1678845 GN=XBAT33_2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology