Basic Information
Locus ID:
gene.Cymno14g02460
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr14 | 9230917 | 9242666 | + | gene.Cymno14g02460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.40 | 88,325.70 Da | 41.08 | 81.24 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 9 | 261 | 2.8084E-67 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 175 | 213 | 2.2E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 93 | 129 | 2.8E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 9 | 45 | 0.0017 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 52 | 87 | 3.5E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 135 | 171 | 1.2E-11 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 644 | 801 | 8.0E-50 | IPR028021 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 7 | 297 | 1.49E-72 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 139 | 349 | 4.0E-37 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 138 | 6.2E-37 | IPR015943 |
| SMART | SM00320 | WD40_4 | 216 | 254 | 20.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 5 | 45 | 2.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 174 | 213 | 8.4E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 132 | 171 | 5.3E-13 | IPR001680 |
| SMART | SM00320 | WD40_4 | 90 | 129 | 1.5E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 48 | 87 | 1.6E-6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 181 | 216 | 12.077406 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 12 | 54 | 11.07656 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 12 | 46 | 8.861059 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 181 | 222 | 15.186998 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 139 | 176 | 14.371031 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 55 | 96 | 15.821944 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 97 | 131 | 12.182859 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 139 | 180 | 18.562237 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 55 | 89 | 11.81377 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 97 | 138 | 15.454345 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 200 | 214 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 158 | 172 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 200 | 214 | 4.3E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 116 | 130 | 4.3E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 158 | 172 | 4.3E-8 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 1 | 804 | 20.761103 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 342 | 408 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G23430.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_010935617.1 | katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Elaeis guineensis] | 0 |
| Q8H0T9 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 OS=Arabidopsis thaliana OX=3702 GN=KTN80.4 PE=1 SV=3 | 0 | |
| TrEMBL | A0A8K0N6X2 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Cocos nucifera OX=13894 GN=COCNU_09G006950 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology