Basic Information
Locus ID:
gene.Cymno14g02420
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr14 | 9202241 | 9209488 | - | gene.Cymno14g02420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.11 | 95,127.75 Da | 57.11 | 65.66 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 524 | 561 | 5.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 373 | 405 | 4.7E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 483 | 519 | 2.6E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 367 | 841 | 2.0E-56 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 446 | 733 | 4.1E-45 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 327 | 421 | 5.7E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 481 | 519 | 4.9E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 802 | 842 | 21.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 654 | 695 | 0.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 613 | 653 | 270.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 563 | 602 | 28.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 367 | 406 | 1.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 522 | 561 | 2.3E-9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 528 | 563 | 11.978851 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 374 | 415 | 13.449252 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 488 | 522 | 10.838322 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 528 | 563 | 9.99469 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 374 | 407 | 11.101955 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 488 | 528 | 14.284707 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 393 | 407 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 506 | 520 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 548 | 562 | 4.6E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 393 | 407 | 4.6E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 506 | 520 | 4.6E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 327 | 341 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 307 | 341 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 87 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 45 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 142 | 169 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 142 | 164 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15470.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_008802494.1 | WD repeat-containing protein 44-like [Phoenix dactylifera] | 0 |
| Q9XSC3 | WD repeat-containing protein 44 OS=Bos taurus OX=9913 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PZ73 | WD-40 repeat family protein OS=Zostera marina OX=29655 GN=ZOSMA_133G00590 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology