Basic Information
Locus ID:
gene.Cymno14g02190
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Ubiquitin fusion degradation protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr14 | 9032035 | 9038205 | - | gene.Cymno14g02190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.41 | 34,926.35 Da | 48.33 | 68.66 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 14 | 185 | 2.6E-78 | IPR004854 |
| Gene3D | G3DSA:2.40.40.50 | - | 7 | 109 | 1.2E-43 | IPR042299 |
| Gene3D | G3DSA:3.10.330.10 | - | 110 | 183 | 1.6E-34 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 314 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 275 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 282 | 304 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_010940943.1 | ubiquitin fusion degradation protein 1 homolog [Elaeis guineensis] | 0 |
| Q55BK0 | Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=ufd1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0K9PGI3 | Ubiquitin fusion degradation protein OS=Zostera marina OX=29655 GN=ZOSMA_26G00790 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology