Basic Information
Locus ID:
gene.Cymno14g01870
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr14 | 8728924 | 8740683 | + | gene.Cymno14g01870 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.15 | 47,146.95 Da | 21.94 | 76.34 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00642 | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 113 | 137 | 2.4E-5 | IPR000571 |
| Pfam | PF00400 | WD domain, G-beta repeat | 146 | 181 | 1.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 269 | 303 | 0.0015 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 308 | 342 | 0.1 | IPR001680 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 112 | 138 | 3.01E-6 | IPR036855 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 142 | 431 | 1.1E-41 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 235 | 434 | 4.7E-29 | IPR015943 |
| Gene3D | G3DSA:3.30.1370.210 | - | 25 | 137 | 5.0E-10 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 138 | 223 | 8.5E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 347 | 390 | 46.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 222 | 259 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 266 | 303 | 2.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 393 | 430 | 5.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 306 | 343 | 0.015 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 111 | 138 | 2.2E-4 | IPR000571 |
| SMART | SM00320 | WD40_4 | 143 | 182 | 5.6E-5 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 25 | 50 | 0.43 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 111 | 139 | 14.483252 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 150 | 181 | 10.23196 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 150 | 191 | 12.947979 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 273 | 304 | 9.678328 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 25 | 51 | 10.474106 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 273 | 312 | 12.246197 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 290 | 304 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 290 | 304 | 3.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 169 | 183 | 3.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 330 | 344 | 3.2E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 86 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_020687963.1 | zinc finger CCCH domain-containing protein 17 [Dendrobium catenatum] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9PZ18 | Zinc finger CCCH domain-containing protein 17 OS=Zostera marina OX=29655 GN=ZOSMA_133G00030 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology