Basic Information
Locus ID:
gene.Cymno14g01200
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr14 | 7939216 | 7949055 | + | gene.Cymno14g01200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.27 | 96,981.06 Da | 67.21 | 62.05 | -1.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 789 | 828 | 5.97757E-20 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 787 | 833 | 4.8E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 781 | 834 | 1.45E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 775 | 839 | 7.5E-12 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 789 | 828 | 10.689412 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 659 | 677 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 168 | 246 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 428 | 452 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 294 | 327 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 464 | 500 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 298 | 327 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 168 | 273 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 525 | 553 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 478 | 500 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 659 | 680 | - | - |
| Coils | Coil | Coil | 717 | 737 | - | - |
| Coils | Coil | Coil | 97 | 117 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_038982731.1 | uncharacterized protein LOC103719555 isoform X1 [Phoenix dactylifera] | 0 |
| TrEMBL | A0A0K9PGB9 | RING/U-box superfamily protein OS=Zostera marina OX=29655 GN=ZOSMA_26G00360 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology