Basic Information
Locus ID:
gene.Cymno14g01100
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr14 | 7719034 | 7734609 | + | gene.Cymno14g01100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.35 | 100,827.49 Da | 48.49 | 81.96 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 111 | 264 | 5.41544E-42 | - |
| CDD | cd14066 | STKc_IRAK | 551 | 808 | 2.03166E-87 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 835 | 876 | 8.4591E-22 | - |
| Pfam | PF04564 | U-box domain | 831 | 902 | 4.5E-20 | IPR003613 |
| Pfam | PF00069 | Protein kinase domain | 550 | 799 | 1.5E-43 | IPR000719 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 121 | 229 | 2.72E-6 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 521 | 806 | 1.28E-69 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 823 | 901 | 8.12E-26 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 106 | 230 | 9.4E-7 | IPR014729 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 524 | 617 | 1.9E-27 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 618 | 817 | 7.0E-49 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 818 | 903 | 1.5E-26 | IPR013083 |
| SMART | SM00220 | serkin_6 | 545 | 812 | 8.2E-37 | IPR000719 |
| SMART | SM00504 | Ubox_2 | 834 | 897 | 2.1E-28 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 545 | 813 | 34.95834 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 830 | 903 | 39.701267 | IPR003613 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 663 | 675 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 551 | 572 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 81 | - | - |
| Coils | Coil | Coil | 405 | 425 | - | - |
| Coils | Coil | Coil | 461 | 516 | - | - |
| Coils | Coil | Coil | 184 | 204 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_010918573.1 | U-box domain-containing protein 33 [Elaeis guineensis] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6I9R153 | U-box domain-containing protein 33 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105042905 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology